1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:2.23e-25:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQA_RS07325
Response regulator OmpR family
Clostridioides difficile Y343 · GCF_000451505
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451505#QQA_RS07325Stable P2CS identifier used across views.
GenomeGCF_000451505Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:148:6.39e-27:221:75:77- Raw architecture: Response_reg:4:2.23e-25:113:111:111#Trans_reg_C:148:6.39e-27:221:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451505::NZ_AVLG01000025.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61912-63614Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQA_1480RefSeq proteinWP_021401218.1
Context group ID
GCF_000451505::NZ_AVLG01000025.1::G00023Context members
QQA_RS07320QQA_RS07325
Partner locus tags
QQA_RS07320QQA_RS07325
Partner old locus tags
QQA_1479QQA_1480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021401218.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQA_RS07325Primary locus identifier stored in the genes table.
Old locus tagQQA_1480Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLG01000025.1Sequence record reported by the local genomic context database.
Genomic interval62 940-63 614 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 912-63 614 ntGCF_000451505::NZ_AVLG01000025.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451505::NZ_AVLG01000025.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLG01000025.1All displayed genes belong to this local TCS context.
Neighborhood span61 912-63 614 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 912 nt63 614 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQA_RS07320GCF_000451505#QQA_RS07320
HKClassic
61 912-62 916 nt · Reverse (-)
QQA_RS07325GCF_000451505#QQA_RS07325
RROmpRCurrent focus
62 940-63 614 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450365#QKQ_RS08370Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1531947
Simplified PFAM architecture for RROC_1531947
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1531947
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000450365#QKQ_RS08370
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 11 over 11 total members. Page 1 / 1.
GCF_000450365#QKQ_RS08370 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 388 · GCF_000451505
AssemblyASM45150v2 · Contighaploid
Genome composition4 037 570 bp · 28,5% GCClostridioides difficile Y343
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key