1 HAMP#1
4-56 aa · 53 aa · 17.4% of protein
Raw token
HAMP:4:0.0000194:56:53:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQ5_RS15245
Histidine kinase, Classic
Clostridioides difficile Y270 · GCF_000451385
ClassHKTypeClassicLength305 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451385#QQ5_RS15245Stable P2CS identifier used across views.
GenomeGCF_000451385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length305 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage226 / 305 aa (74.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa305 aa
Domain-by-domain annotation3 items
2 HisKA#2
85-150 aa · 66 aa · 21.6% of protein
Raw token
HisKA:85:0.0000000148:150:66:643 HATPase_c#3
197-303 aa · 107 aa · 35.1% of protein
Raw token
HATPase_c:197:5.07e-32:303:107:109- Raw architecture: HAMP:4:0.0000194:56:53:69#HisKA:85:0.0000000148:150:66:64#HATPase_c:197:5.07e-32:303:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451385::NZ_AVLD01000037.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span342067-343682Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQ5_3079RefSeq proteinWP_009255074.1
Context group ID
GCF_000451385::NZ_AVLD01000037.1::G00046Context members
QQ5_RS15240QQ5_RS15245
Partner locus tags
QQ5_RS15240QQ5_RS15245
Partner old locus tags
QQ5_3078QQ5_3079
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009255074.1Primary protein accession used for annex mappings.
UniProt accessionA0A411ZXW5Primary UniProt accession resolved in the annex database.
UniProt IDA0A411ZXW5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQ5_RS15245Primary locus identifier stored in the genes table.
Old locus tagQQ5_3079Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLD01000037.1Sequence record reported by the local genomic context database.
Genomic interval342 765-343 682 nt918 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span342 067-343 682 ntGCF_000451385::NZ_AVLD01000037.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451385::NZ_AVLD01000037.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLD01000037.1All displayed genes belong to this local TCS context.
Neighborhood span342 067-343 682 nt1 616 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
342 067 nt343 682 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQ5_RS15240GCF_000451385#QQ5_RS15240
RROmpR
342 067-342 759 nt · Forward (+)
QQ5_RS15245GCF_000451385#QQ5_RS15245
HKClassicCurrent focus
342 765-343 682 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000451385#QQ5_RS15245The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2882103
Simplified PFAM architecture for HKOC_2882103
PFAM domain coverage: 171 / 305 aa (56.1%)
1 aa305 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[85-148] | HATPase_c[197-303]
- Domain count: 2
- Matched identifier: HKOC_2882103
- Positioned domains: HisKA 85-148 ; HATPase_c 197-303
Cluster members and taxonomy
Representative gene: GCF_000451385#QQ5_RS15245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 385 · GCF_000451385
AssemblyASM45138v2 · Contighaploid
Genome composition4 149 527 bp · 28,5% GCClostridioides difficile Y270
Signal transduction countsGenes 97 · HK 47 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key