1 Response_reg#1
4-106 aa · 103 aa · 44.0% of protein
Raw token
Response_reg:4:2.52e-19:106:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QOO_RS01095
Response regulator LytTR family
Clostridioides difficile Y165 · GCF_000451365
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451365#QOO_RS01095Stable P2CS identifier used across views.
GenomeGCF_000451365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 234 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
134-226 aa · 93 aa · 39.7% of protein
Raw token
LytTR:134:7.21e-19:226:98:98- Raw architecture: Response_reg:4:2.52e-19:106:108:111#LytTR:134:7.21e-19:226:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451365::NZ_AVKV01000031.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149-853Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQOO_4157RefSeq proteinWP_021402208.1
Context group ID
GCF_000451365::NZ_AVKV01000031.1::G00001Context members
QOO_RS01095
Partner locus tags
QOO_RS01095
Partner old locus tags
QOO_4157
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021402208.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8WRV2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8WRV2_CLODIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQOO_RS01095Primary locus identifier stored in the genes table.
Old locus tagQOO_4157Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKV01000031.1Sequence record reported by the local genomic context database.
Genomic interval149-853 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149-853 ntGCF_000451365::NZ_AVKV01000031.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451365::NZ_AVKV01000031.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKV01000031.1All displayed genes belong to this local TCS context.
Neighborhood span149-853 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 nt853 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QOO_RS01095GCF_000451365#QOO_RS01095
RRLytTRCurrent focus
149-853 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450425#QKW_RS19565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049067
Simplified PFAM architecture for RROC_1049067
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[135-226]
- Domain count: 2
- Matched identifier: RROC_1049067
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 135-226 ; LytTR 135-226
Cluster members and taxonomy
Representative gene: GCF_000450425#QKW_RS19565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 377 · GCF_000451365
AssemblyASM45136v2 · Contighaploid
Genome composition4 263 767 bp · 28,5% GCClostridioides difficile Y165
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key