1 HisKA#1
9-73 aa · 65 aa · 30.1% of protein
Raw token
HisKA:9:0.000000837:73:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMO_RS09040
Histidine kinase, Classic
Clostridioides difficile DA00305 · GCF_000451345
ClassHKTypeClassicLength216 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000451345#QMO_RS09040Stable P2CS identifier used across views.
GenomeGCF_000451345Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length216 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage143 / 216 aa (66.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa216 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
119-196 aa · 78 aa · 36.1% of protein
Raw token
HATPase_c:119:0.00000293:196:90:109- Raw architecture: HisKA:9:0.000000837:73:65:64#HATPase_c:119:0.00000293:196:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000451345::NZ_AVKH01000304.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-653Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMO_1847RefSeq proteinWP_021405733.1
Context group ID
GCF_000451345::NZ_AVKH01000304.1::G00031Context members
QMO_RS09040
Partner locus tags
QMO_RS09040
Partner old locus tags
QMO_1847
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021405733.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMO_RS09040Primary locus identifier stored in the genes table.
Old locus tagQMO_1847Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKH01000304.1Sequence record reported by the local genomic context database.
Genomic interval1-653 nt653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-653 ntGCF_000451345::NZ_AVKH01000304.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451345::NZ_AVKH01000304.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKH01000304.1All displayed genes belong to this local TCS context.
Neighborhood span1-653 nt653 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt653 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMO_RS09040GCF_000451345#QMO_RS09040
HKClassicCurrent focus
1-653 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448965#QCA_RS16925Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2072075
Simplified PFAM architecture for HKOC_2072075
PFAM domain coverage: 143 / 440 aa (32.5%)
1 aa440 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-297] | HATPase_c[343-421]
- Domain count: 2
- Matched identifier: HKOC_2072075
- Positioned domains: HisKA 234-297 ; HATPase_c 343-421
Cluster members and taxonomy
Representative gene: GCF_000448965#QCA_RS16925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 359 · GCF_000451345
AssemblyASM45134v1 · Contighaploid
Genome composition3 988 162 bp · 28,5% GCClostridioides difficile DA00305
Signal transduction countsGenes 97 · HK 44 · RR 52CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key