1 Response_reg#1
6-116 aa · 111 aa · 48.1% of protein
Raw token
Response_reg:6:8.38e-36:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEE_RS01205
Response regulator OmpR family
Clostridioides difficile CD113 · GCF_000451305
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451305#QEE_RS01205Stable P2CS identifier used across views.
GenomeGCF_000451305Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:148:4.94e-25:224:77:77- Raw architecture: Response_reg:6:8.38e-36:116:112:111#Trans_reg_C:148:4.94e-25:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451305::NZ_AVHN01000013.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span84908-86970Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEE_0210RefSeq proteinWP_009901663.1
Context group ID
GCF_000451305::NZ_AVHN01000013.1::G00001Context members
QEE_RS01200QEE_RS01205
Partner locus tags
QEE_RS01200QEE_RS01205
Partner old locus tags
QEE_0209QEE_0210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009901663.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74QDA2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74QDA2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEE_RS01205Primary locus identifier stored in the genes table.
Old locus tagQEE_0210Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHN01000013.1Sequence record reported by the local genomic context database.
Genomic interval86 275-86 970 nt696 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span84 908-86 970 ntGCF_000451305::NZ_AVHN01000013.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451305::NZ_AVHN01000013.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHN01000013.1All displayed genes belong to this local TCS context.
Neighborhood span84 908-86 970 nt2 063 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
84 908 nt86 970 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QEE_RS01200GCF_000451305#QEE_RS01200
HKClassic
84 908-86 278 nt · Reverse (-)
QEE_RS01205GCF_000451305#QEE_RS01205
RROmpRCurrent focus
86 275-86 970 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155025#UAB_RS0201845Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158115
Simplified PFAM architecture for RROC_1158115
PFAM domain coverage: 187 / 231 aa (81.0%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-224]
- Domain count: 2
- Matched identifier: RROC_1158115
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 148-224 ; Trans_reg_C 148-224
Cluster members and taxonomy
Representative gene: GCF_000155025#UAB_RS0201845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 283 · GCF_000451305
AssemblyASM45130v2 · Contighaploid
Genome composition4 255 649 bp · 29,0% GCClostridioides difficile CD113
Signal transduction countsGenes 104 · HK 50 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key