1 Response_reg#1
1-97 aa · 97 aa · 45.1% of protein
Raw token
Response_reg:1:6.68e-29:97:99:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEC_RS02385
Response regulator OmpR family
Clostridioides difficile CD111 · GCF_000451285
ClassRRTypeOmpRLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000451285#QEC_RS02385Stable P2CS identifier used across views.
GenomeGCF_000451285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 215 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
136-212 aa · 77 aa · 35.8% of protein
Raw token
Trans_reg_C:136:2.84e-28:212:77:77- Raw architecture: Response_reg:1:6.68e-29:97:99:111#Trans_reg_C:136:2.84e-28:212:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000451285::NZ_AVHM01000038.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-2091Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEC_0462RefSeq proteinWP_021378677.1
Context group ID
GCF_000451285::NZ_AVHM01000038.1::G00004Context members
QEC_RS02385QEC_RS02390
Partner locus tags
QEC_RS02385QEC_RS02390
Partner old locus tags
QEC_0462QEC_0463
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021378677.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEC_RS02385Primary locus identifier stored in the genes table.
Old locus tagQEC_0462Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHM01000038.1Sequence record reported by the local genomic context database.
Genomic interval1-648 nt648 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-2 091 ntGCF_000451285::NZ_AVHM01000038.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451285::NZ_AVHM01000038.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHM01000038.1All displayed genes belong to this local TCS context.
Neighborhood span1-2 091 nt2 091 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt2 091 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QEC_RS02385GCF_000451285#QEC_RS02385
RROmpRCurrent focus
1-648 nt · Forward (+)
QEC_RS02390GCF_000451285#QEC_RS02390
HKClassic
667-2 091 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1199614
Simplified PFAM architecture for RROC_1199614
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1199614
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 282 · GCF_000451285
AssemblyASM45128v2 · Contighaploid
Genome composition4 047 257 bp · 28,5% GCClostridioides difficile CD111
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key