1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.68e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QSE_RS17905
Response regulator OmpR family
Clostridioides difficile P24 · GCF_000451085
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000451085#QSE_RS17905Stable P2CS identifier used across views.
GenomeGCF_000451085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.42e-22:223:75:77- Raw architecture: Response_reg:5:1.68e-23:114:111:111#Trans_reg_C:150:2.42e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000451085::NZ_AVMA01000050.1::G00052
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span103666-109391Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQSE_3638RefSeq proteinWP_021363031.1
Context group ID
GCF_000451085::NZ_AVMA01000050.1::G00052Context members
QSE_RS17895QSE_RS17900QSE_RS17905QSE_RS17910QSE_RS17915
Partner locus tags
QSE_RS17895QSE_RS17900QSE_RS17905QSE_RS17910QSE_RS17915
Partner old locus tags
QSE_3636QSE_3637QSE_3638QSE_3639QSE_3640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQSE_RS17905Primary locus identifier stored in the genes table.
Old locus tagQSE_3638Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVMA01000050.1Sequence record reported by the local genomic context database.
Genomic interval105 897-106 577 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span103 666-109 391 ntGCF_000451085::NZ_AVMA01000050.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000451085::NZ_AVMA01000050.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVMA01000050.1All displayed genes belong to this local TCS context.
Neighborhood span103 666-109 391 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 666 nt109 391 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
QSE_RS17895GCF_000451085#QSE_RS17895
HKClassic
103 666-104 781 nt · Reverse (-)
QSE_RS17900GCF_000451085#QSE_RS17900
RROmpR
104 817-105 515 nt · Reverse (-)
QSE_RS17905GCF_000451085#QSE_RS17905
RROmpRCurrent focus
105 897-106 577 nt · Reverse (-)
QSE_RS17910GCF_000451085#QSE_RS17910
HKClassic
106 627-108 642 nt · Reverse (-)
QSE_RS17915GCF_000451085#QSE_RS17915
RROmpR
108 714-109 391 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS17160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410983
Simplified PFAM architecture for RROC_1410983
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1410983
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS17160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 408 · GCF_000451085
AssemblyASM45108v2 · Contighaploid
Genome composition4 254 791 bp · 28,5% GCClostridioides difficile P24
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key