1 Response_reg#1
5-116 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:5:1.16e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQK_RS02525
Response regulator, CheY family
Clostridioides difficile P1 · GCF_000450925
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450925#QQK_RS02525Stable P2CS identifier used across views.
GenomeGCF_000450925Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:1.16e-33:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450925::NZ_AVLL01000017.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span51084-51446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQK_0513RefSeq proteinWP_003425081.1
Context group ID
GCF_000450925::NZ_AVLL01000017.1::G00008Context members
QQK_RS02525
Partner locus tags
QQK_RS02525
Partner old locus tags
QQK_0513
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003425081.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3N040Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3N040_CLODCDisplay identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQK_RS02525Primary locus identifier stored in the genes table.
Old locus tagQQK_0513Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLL01000017.1Sequence record reported by the local genomic context database.
Genomic interval51 084-51 446 nt363 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 084-51 446 ntGCF_000450925::NZ_AVLL01000017.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450925::NZ_AVLL01000017.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLL01000017.1All displayed genes belong to this local TCS context.
Neighborhood span51 084-51 446 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 084 nt51 446 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQK_RS02525GCF_000450925#QQK_RS02525
RRCheYCurrent focus
51 084-51 446 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202735Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2434048
Simplified PFAM architecture for RROC_2434048
PFAM domain coverage: 111 / 120 aa (92.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2434048
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 393 · GCF_000450925
AssemblyASM45092v2 · Contighaploid
Genome composition4 104 507 bp · 28,5% GCClostridioides difficile P1
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key