1 Response_reg#1
4-112 aa · 109 aa · 83.8% of protein
Raw token
Response_reg:4:2.06e-24:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQI_RS19760
Response regulator, CheY family
Clostridioides difficile Y401 · GCF_000450905
ClassRRTypeCheYLength130 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450905#QQI_RS19760Stable P2CS identifier used across views.
GenomeGCF_000450905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length130 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 130 aa (83.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa130 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.06e-24:112:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450905::NZ_AVLK01000024.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22140-23982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQI_0444RefSeq proteinWP_021415626.1
Context group ID
GCF_000450905::NZ_AVLK01000024.1::G00003Context members
QQI_RS02160QQI_RS19760
Partner locus tags
QQI_RS02160QQI_RS19760
Partner old locus tags
QQI_0442QQI_0444
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021415626.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQI_RS19760Primary locus identifier stored in the genes table.
Old locus tagQQI_0444Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLK01000024.1Sequence record reported by the local genomic context database.
Genomic interval23 590-23 982 nt393 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 140-23 982 ntGCF_000450905::NZ_AVLK01000024.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450905::NZ_AVLK01000024.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLK01000024.1All displayed genes belong to this local TCS context.
Neighborhood span22 140-23 982 nt1 843 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 140 nt23 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QQI_RS02160GCF_000450905#QQI_RS02160
HKClassic
22 140-23 321 nt · Reverse (-)
QQI_RS19760GCF_000450905#QQI_RS19760
RRCheYCurrent focus
23 590-23 982 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450905#QQI_RS19760The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2322186
Simplified PFAM architecture for RROC_2322186
PFAM domain coverage: 108 / 130 aa (83.1%)
1 aa130 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-111]
- Domain count: 1
- Matched identifier: RROC_2322186
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111
Cluster members and taxonomy
Representative gene: GCF_000450905#QQI_RS19760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 392 · GCF_000450905
AssemblyASM45090v2 · Contighaploid
Genome composition4 000 151 bp · 28,5% GCClostridioides difficile Y401
Signal transduction countsGenes 92 · HK 44 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key