1 HisKA#1
136-202 aa · 67 aa · 18.8% of protein
Raw token
HisKA:136:0.0000000000000146:202:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QQI_RS11070
Histidine kinase, Classic
Clostridioides difficile Y401 · GCF_000450905
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450905#QQI_RS11070Stable P2CS identifier used across views.
GenomeGCF_000450905Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 357 aa (42.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa357 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
255-340 aa · 86 aa · 24.1% of protein
Raw token
HATPase_c:255:0.0000000556:340:90:109- Raw architecture: HisKA:136:0.0000000000000146:202:67:64#HATPase_c:255:0.0000000556:340:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450905::NZ_AVLK01000137.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-1075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQQI_2273RefSeq proteinWP_032507148.1
Context group ID
GCF_000450905::NZ_AVLK01000137.1::G00038Context members
QQI_RS11070
Partner locus tags
QQI_RS11070
Partner old locus tags
QQI_2273
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032507148.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQQI_RS11070Primary locus identifier stored in the genes table.
Old locus tagQQI_2273Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVLK01000137.1Sequence record reported by the local genomic context database.
Genomic interval1-1 075 nt1 075 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-1 075 ntGCF_000450905::NZ_AVLK01000137.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450905::NZ_AVLK01000137.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVLK01000137.1All displayed genes belong to this local TCS context.
Neighborhood span1-1 075 nt1 075 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt1 075 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QQI_RS11070GCF_000450905#QQI_RS11070
HKClassicCurrent focus
1-1 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450905#QQI_RS11070The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765307
Simplified PFAM architecture for HKOC_2765307
PFAM domain coverage: 193 / 357 aa (54.1%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[82-123] | HisKA[137-202] | HATPase_c[253-337]
- Domain count: 3
- Matched identifier: HKOC_2765307
- Positioned domains: HAMP 82-123 ; HisKA 137-202 ; HATPase_c 253-337
Cluster members and taxonomy
Representative gene: GCF_000450905#QQI_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 392 · GCF_000450905
AssemblyASM45090v2 · Contighaploid
Genome composition4 000 151 bp · 28,5% GCClostridioides difficile Y401
Signal transduction countsGenes 92 · HK 44 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key