1 SBP_bac_3#1
63-283 aa · 221 aa · 33.0% of protein
Raw token
SBP_bac_3:63:1.74e-41:283:230:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QOM_RS08495
Histidine kinase, Classic
Clostridioides difficile Y155 · GCF_000450885
ClassHKTypeClassicLength669 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450885#QOM_RS08495Stable P2CS identifier used across views.
GenomeGCF_000450885Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length669 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage386 / 669 aa (57.7%)Merged over positioned domains only.
Domain description1 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa669 aa
Domain-by-domain annotation3 items
2 HisKA#2
451-513 aa · 63 aa · 9.4% of protein
Raw token
HisKA:451:0.0000000000000367:513:63:643 HATPase_c#3
562-663 aa · 102 aa · 15.2% of protein
Raw token
HATPase_c:562:1.57e-23:663:103:109- Raw architecture: SBP_bac_3:63:1.74e-41:283:230:224#HisKA:451:0.0000000000000367:513:63:64#HATPase_c:562:1.57e-23:663:103:109
- Domain description: 1 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450885::NZ_AVKU01000115.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1-3333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQOM_1706RefSeq proteinWP_234779076.1
Context group ID
GCF_000450885::NZ_AVKU01000115.1::G00029Context members
QOM_RS08495QOM_RS08500
Partner locus tags
QOM_RS08495QOM_RS08500
Partner old locus tags
QOM_1706QOM_1707
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234779076.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQOM_RS08495Primary locus identifier stored in the genes table.
Old locus tagQOM_1706Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKU01000115.1Sequence record reported by the local genomic context database.
Genomic interval1-2 011 nt2 011 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-3 333 ntGCF_000450885::NZ_AVKU01000115.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450885::NZ_AVKU01000115.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKU01000115.1All displayed genes belong to this local TCS context.
Neighborhood span1-3 333 nt3 333 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt3 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QOM_RS08495GCF_000450885#QOM_RS08495
HKClassicCurrent focus
1-2 011 nt · Forward (+)
QOM_RS08500GCF_000450885#QOM_RS08500
RRNtrC
2 011-3 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450885#QOM_RS08495The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0847989
Simplified PFAM architecture for HKOC_0847989
PFAM domain coverage: 385 / 669 aa (57.5%)
1 aa669 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[65-282] | HisKA[453-514] | HATPase_c[560-664]
- Domain count: 3
- Matched identifier: HKOC_0847989
- Positioned domains: SBP_bac_3 65-282 ; HisKA 453-514 ; HATPase_c 560-664
Cluster members and taxonomy
Representative gene: GCF_000450885#QOM_RS08495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 376 · GCF_000450885
AssemblyASM45088v2 · Contighaploid
Genome composition3 980 239 bp · 28,0% GCClostridioides difficile Y155
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key