1 Response_reg#1
4-86 aa · 83 aa · 93.3% of protein
Raw token
Response_reg:4:1.19e-16:86:83:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QO5_RS20250
Response regulator, CheY family
Clostridioides difficile F253 · GCF_000450765
ClassRRTypeCheYLength89 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450765#QO5_RS20250Stable P2CS identifier used across views.
GenomeGCF_000450765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length89 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage83 / 89 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa89 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:1.19e-16:86:83:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450765::NZ_AVKO01000065.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4897-5166Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQO5_0436RefSeq proteinWP_021406976.1
Context group ID
GCF_000450765::NZ_AVKO01000065.1::G00003Context members
QO5_RS20250
Partner locus tags
QO5_RS20250
Partner old locus tags
QO5_0436
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021406976.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQO5_RS20250Primary locus identifier stored in the genes table.
Old locus tagQO5_0436Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKO01000065.1Sequence record reported by the local genomic context database.
Genomic interval4 897-5 166 nt270 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 897-5 166 ntGCF_000450765::NZ_AVKO01000065.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450765::NZ_AVKO01000065.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKO01000065.1All displayed genes belong to this local TCS context.
Neighborhood span4 897-5 166 nt270 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 897 nt5 166 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QO5_RS20250GCF_000450765#QO5_RS20250
RRCheYCurrent focus
4 897-5 166 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789273
Simplified PFAM architecture for RROC_0789273
PFAM domain coverage: 202 / 245 aa (82.4%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-234]
- Domain count: 2
- Matched identifier: RROC_0789273
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-234 ; LytTR 143-234
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 367 · GCF_000450765
AssemblyASM45076v2 · Contighaploid
Genome composition4 056 592 bp · 28,5% GCClostridioides difficile F253
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key