1 HisKA#1
44-111 aa · 68 aa · 25.6% of protein
Raw token
HisKA:44:0.0000000000000992:111:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMY_RS21880
Histidine kinase, Classic
Clostridioides difficile F152 · GCF_000450725
ClassHKTypeClassicLength266 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450725#QMY_RS21880Stable P2CS identifier used across views.
GenomeGCF_000450725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length266 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 266 aa (65.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa266 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
158-264 aa · 107 aa · 40.2% of protein
Raw token
HATPase_c:158:3.67e-27:264:108:109- Raw architecture: HisKA:44:0.0000000000000992:111:68:64#HATPase_c:158:3.67e-27:264:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450725::NZ_AVKM01000012.1::G00026
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span239478-240278Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMY_1748RefSeq proteinWP_236731315.1
Context group ID
GCF_000450725::NZ_AVKM01000012.1::G00026Context members
QMY_RS21880
Partner locus tags
QMY_RS21880
Partner old locus tags
QMY_1748
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_236731315.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMY_RS21880Primary locus identifier stored in the genes table.
Old locus tagQMY_1748Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKM01000012.1Sequence record reported by the local genomic context database.
Genomic interval239 478-240 278 nt801 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span239 478-240 278 ntGCF_000450725::NZ_AVKM01000012.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450725::NZ_AVKM01000012.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKM01000012.1All displayed genes belong to this local TCS context.
Neighborhood span239 478-240 278 nt801 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
239 478 nt240 278 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMY_RS21880GCF_000450725#QMY_RS21880
HKClassicCurrent focus
239 478-240 278 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0210610Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1747748
Simplified PFAM architecture for HKOC_1747748
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1747748
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0210610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 364 · GCF_000450725
AssemblyASM45072v2 · Contighaploid
Genome composition4 353 275 bp · 28,5% GCClostridioides difficile F152
Signal transduction countsGenes 99 · HK 47 · RR 51CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key