1 HisKA#1
103-169 aa · 67 aa · 20.7% of protein
Raw token
HisKA:103:0.0000000000000184:169:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMU_RS11580
Histidine kinase, Classic
Clostridioides difficile DA00310 · GCF_000450685
ClassHKTypeClassicLength324 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450685#QMU_RS11580Stable P2CS identifier used across views.
GenomeGCF_000450685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length324 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 324 aa (47.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
222-307 aa · 86 aa · 26.5% of protein
Raw token
HATPase_c:222:0.0000000578:307:90:109- Raw architecture: HisKA:103:0.0000000000000184:169:67:64#HATPase_c:222:0.0000000578:307:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450685::NZ_AVKK01000403.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMU_2358RefSeq proteinWP_021406469.1
Context group ID
GCF_000450685::NZ_AVKK01000403.1::G00038Context members
QMU_RS11580
Partner locus tags
QMU_RS11580
Partner old locus tags
QMU_2358
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021406469.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMU_RS11580Primary locus identifier stored in the genes table.
Old locus tagQMU_2358Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKK01000403.1Sequence record reported by the local genomic context database.
Genomic interval1-975 nt975 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-975 ntGCF_000450685::NZ_AVKK01000403.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450685::NZ_AVKK01000403.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKK01000403.1All displayed genes belong to this local TCS context.
Neighborhood span1-975 nt975 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt975 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMU_RS11580GCF_000450685#QMU_RS11580
HKClassicCurrent focus
1-975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS12495Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359670
Simplified PFAM architecture for HKOC_1359670
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359670
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS12495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 362 · GCF_000450685
AssemblyASM45068v2 · Contighaploid
Genome composition3 909 936 bp · 28,5% GCClostridioides difficile DA00310
Signal transduction countsGenes 97 · HK 45 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key