1 Response_reg#1
12-120 aa · 109 aa · 45.2% of protein
Raw token
Response_reg:12:4.25e-29:120:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMU_RS07030
Response regulator OmpR family
Clostridioides difficile DA00310 · GCF_000450685
ClassRRTypeOmpRLength241 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450685#QMU_RS07030Stable P2CS identifier used across views.
GenomeGCF_000450685Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 241 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 32.4% of protein
Raw token
Trans_reg_C:155:2.21e-30:232:78:77- Raw architecture: Response_reg:12:4.25e-29:120:110:111#Trans_reg_C:155:2.21e-30:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450685::NZ_AVKK01000208.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1506-3462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMU_1433RefSeq proteinWP_003438649.1
Context group ID
GCF_000450685::NZ_AVKK01000208.1::G00019Context members
QMU_RS07030QMU_RS07035
Partner locus tags
QMU_RS07030QMU_RS07035
Partner old locus tags
QMU_1433QMU_1434
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003438649.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN6A4Z5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN6A4Z5_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMU_RS07030Primary locus identifier stored in the genes table.
Old locus tagQMU_1433Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKK01000208.1Sequence record reported by the local genomic context database.
Genomic interval1 506-2 231 nt726 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 506-3 462 ntGCF_000450685::NZ_AVKK01000208.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450685::NZ_AVKK01000208.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKK01000208.1All displayed genes belong to this local TCS context.
Neighborhood span1 506-3 462 nt1 957 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 506 nt3 462 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMU_RS07030GCF_000450685#QMU_RS07030
RROmpRCurrent focus
1 506-2 231 nt · Forward (+)
QMU_RS07035GCF_000450685#QMU_RS07035
HKClassic
2 209-3 462 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0209045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0862776
Simplified PFAM architecture for RROC_0862776
PFAM domain coverage: 185 / 241 aa (76.8%)
1 aa241 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[12-120] | Trans_reg_C[156-231]
- Domain count: 2
- Matched identifier: RROC_0862776
- Positioned domains: Response_reg 12-120 ; Response_reg 12-120 ; Trans_reg_C 156-231 ; Trans_reg_C 156-231
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0209045
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 1 824 total members. Page 1 / 37.
GCF_000154625#QAB_RS0209045 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 362 · GCF_000450685
AssemblyASM45068v2 · Contighaploid
Genome composition3 909 936 bp · 28,5% GCClostridioides difficile DA00310
Signal transduction countsGenes 97 · HK 45 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key