1 HisKA_3#1
137-202 aa · 66 aa · 19.6% of protein
Raw token
HisKA_3:137:2.13e-20:202:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMC_RS05995
Histidine kinase, Classic
Clostridioides difficile DA00245 · GCF_000450585
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450585#QMC_RS05995Stable P2CS identifier used across views.
GenomeGCF_000450585Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 336 aa (44.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-327 aa · 85 aa · 25.3% of protein
Raw token
HATPase_c:243:0.000000000227:327:104:109- Raw architecture: HisKA_3:137:2.13e-20:202:67:68#HATPase_c:243:0.000000000227:327:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450585::NZ_AVKB01000101.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8643-10295Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMC_1224RefSeq proteinWP_032544822.1
Context group ID
GCF_000450585::NZ_AVKB01000101.1::G00018Context members
QMC_RS05990QMC_RS05995
Partner locus tags
QMC_RS05990QMC_RS05995
Partner old locus tags
QMC_1223QMC_1224
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032544822.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMC_RS05995Primary locus identifier stored in the genes table.
Old locus tagQMC_1224Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKB01000101.1Sequence record reported by the local genomic context database.
Genomic interval9 283-10 295 nt1 013 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span8 643-10 295 ntGCF_000450585::NZ_AVKB01000101.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450585::NZ_AVKB01000101.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKB01000101.1All displayed genes belong to this local TCS context.
Neighborhood span8 643-10 295 nt1 653 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 643 nt10 295 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMC_RS05990GCF_000450585#QMC_RS05990
RRNarL
8 643-9 290 nt · Reverse (-)
QMC_RS05995GCF_000450585#QMC_RS05995
HKClassicCurrent focus
9 283-10 295 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS06915Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2550380
Simplified PFAM architecture for HKOC_2550380
PFAM domain coverage: 150 / 387 aa (38.8%)
1 aa387 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[188-252] | HATPase_c[294-378]
- Domain count: 2
- Matched identifier: HKOC_2550380
- Positioned domains: HisKA_3 188-252 ; HATPase_c 294-378
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS06915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 353 · GCF_000450585
AssemblyASM45058v2 · Contighaploid
Genome composition3 985 935 bp · 28,5% GCClostridioides difficile DA00245
Signal transduction countsGenes 95 · HK 46 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key