1 HisKA#1
245-309 aa · 65 aa · 13.9% of protein
Raw token
HisKA:245:0.00000000000187:309:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QM3_RS03400
Histidine kinase, Classic
Clostridioides difficile DA00215 · GCF_000450485
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450485#QM3_RS03400Stable P2CS identifier used across views.
GenomeGCF_000450485Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 468 aa (37.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
357-466 aa · 110 aa · 23.5% of protein
Raw token
HATPase_c:357:5.87e-18:466:110:109- Raw architecture: HisKA:245:0.00000000000187:309:65:64#HATPase_c:357:5.87e-18:466:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450485::NZ_AVJW01000036.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2748-4906Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQM3_0670RefSeq proteinWP_016728651.1
Context group ID
GCF_000450485::NZ_AVJW01000036.1::G00014Context members
QM3_RS03395QM3_RS03400
Partner locus tags
QM3_RS03395QM3_RS03400
Partner old locus tags
QM3_0669QM3_0670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016728651.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQM3_RS03400Primary locus identifier stored in the genes table.
Old locus tagQM3_0670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJW01000036.1Sequence record reported by the local genomic context database.
Genomic interval3 500-4 906 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 748-4 906 ntGCF_000450485::NZ_AVJW01000036.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450485::NZ_AVJW01000036.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJW01000036.1All displayed genes belong to this local TCS context.
Neighborhood span2 748-4 906 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 748 nt4 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QM3_RS03395GCF_000450485#QM3_RS03395
RROmpR
2 748-3 455 nt · Forward (+)
QM3_RS03400GCF_000450485#QM3_RS03400
HKClassicCurrent focus
3 500-4 906 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0103550Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737789
Simplified PFAM architecture for HKOC_1737789
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737789
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0103550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 348 · GCF_000450485
AssemblyASM45048v2 · Contighaploid
Genome composition3 984 681 bp · 28,5% GCClostridioides difficile DA00215
Signal transduction countsGenes 99 · HK 49 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key