1 HisKA_3#1
188-253 aa · 66 aa · 17.1% of protein
Raw token
HisKA_3:188:3.27e-20:253:67:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QM1_RS06600
Histidine kinase, Classic
Clostridioides difficile DA00212 · GCF_000450465
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450465#QM1_RS06600Stable P2CS identifier used across views.
GenomeGCF_000450465Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage151 / 387 aa (39.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
294-378 aa · 85 aa · 22.0% of protein
Raw token
HATPase_c:294:0.00000000777:378:104:109- Raw architecture: HisKA_3:188:3.27e-20:253:67:68#HATPase_c:294:0.00000000777:378:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450465::NZ_AVJV01000039.1::G00019
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span9487-10650Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQM1_1352RefSeq proteinWP_021373389.1
Context group ID
GCF_000450465::NZ_AVJV01000039.1::G00019Context members
QM1_RS06600
Partner locus tags
QM1_RS06600
Partner old locus tags
QM1_1352
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021373389.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQM1_RS06600Primary locus identifier stored in the genes table.
Old locus tagQM1_1352Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJV01000039.1Sequence record reported by the local genomic context database.
Genomic interval9 487-10 650 nt1 164 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 487-10 650 ntGCF_000450465::NZ_AVJV01000039.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450465::NZ_AVJV01000039.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJV01000039.1All displayed genes belong to this local TCS context.
Neighborhood span9 487-10 650 nt1 164 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 487 nt10 650 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QM1_RS06600GCF_000450465#QM1_RS06600
HKClassicCurrent focus
9 487-10 650 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_004318545#E0R11_RS17805Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2453446
Simplified PFAM architecture for HKOC_2453446
PFAM domain coverage: 150 / 399 aa (37.6%)
1 aa399 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[200-264] | HATPase_c[306-390]
- Domain count: 2
- Matched identifier: HKOC_2453446
- Positioned domains: HisKA_3 200-264 ; HATPase_c 306-390
Cluster members and taxonomy
Representative gene: GCF_004318545#E0R11_RS17805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 347 · GCF_000450465
AssemblyASM45046v2 · Contighaploid
Genome composition4 149 547 bp · 28,0% GCClostridioides difficile DA00212
Signal transduction countsGenes 100 · HK 48 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key