1 Response_reg#1
4-116 aa · 113 aa · 50.0% of protein
Raw token
Response_reg:4:4.51e-16:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKY_RS02330
Response regulator LytTR family
Clostridioides difficile DA00211 · GCF_000450445
ClassRRTypeLytTRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450445#QKY_RS02330Stable P2CS identifier used across views.
GenomeGCF_000450445Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 226 aa (88.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-225 aa · 87 aa · 38.5% of protein
Raw token
LytTR:139:2.77e-20:225:93:98- Raw architecture: Response_reg:4:4.51e-16:116:116:111#LytTR:139:2.77e-20:225:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450445::NZ_AVJU01000011.1::G00007
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1676-2356Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKY_0464RefSeq proteinWP_021402308.1
Context group ID
GCF_000450445::NZ_AVJU01000011.1::G00007Context members
QKY_RS02330
Partner locus tags
QKY_RS02330
Partner old locus tags
QKY_0464
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021402308.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKY_RS02330Primary locus identifier stored in the genes table.
Old locus tagQKY_0464Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJU01000011.1Sequence record reported by the local genomic context database.
Genomic interval1 676-2 356 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 676-2 356 ntGCF_000450445::NZ_AVJU01000011.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450445::NZ_AVJU01000011.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJU01000011.1All displayed genes belong to this local TCS context.
Neighborhood span1 676-2 356 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 676 nt2 356 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QKY_RS02330GCF_000450445#QKY_RS02330
RRLytTRCurrent focus
1 676-2 356 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450445#QKY_RS02330The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410995
Simplified PFAM architecture for RROC_1410995
PFAM domain coverage: 199 / 226 aa (88.1%)
1 aa226 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[140-225]
- Domain count: 2
- Matched identifier: RROC_1410995
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 140-225 ; LytTR 140-225
Cluster members and taxonomy
Representative gene: GCF_000450445#QKY_RS02330
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 346 · GCF_000450445
AssemblyASM45044v2 · Contighaploid
Genome composition4 072 757 bp · 28,5% GCClostridioides difficile DA00211
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key