1 Response_reg#1
3-115 aa · 113 aa · 49.6% of protein
Raw token
Response_reg:3:8.88e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKW_RS19910
Response regulator OmpR family
Clostridioides difficile DA00210 · GCF_000450425
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450425#QKW_RS19910Stable P2CS identifier used across views.
GenomeGCF_000450425Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage189 / 228 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:148:1.56e-19:223:77:77- Raw architecture: Response_reg:3:8.88e-28:115:113:111#Trans_reg_C:148:1.56e-19:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450425::NZ_AVJT01000116.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5259-7231Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKW_4072RefSeq proteinWP_021402235.1
Context group ID
GCF_000450425::NZ_AVJT01000116.1::G00057Context members
QKW_RS19910QKW_RS19915
Partner locus tags
QKW_RS19910QKW_RS19915
Partner old locus tags
QKW_4072QKW_4073
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021402235.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8RL15Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8RL15_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKW_RS19910Primary locus identifier stored in the genes table.
Old locus tagQKW_4072Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJT01000116.1Sequence record reported by the local genomic context database.
Genomic interval5 259-5 945 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 259-7 231 ntGCF_000450425::NZ_AVJT01000116.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450425::NZ_AVJT01000116.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJT01000116.1All displayed genes belong to this local TCS context.
Neighborhood span5 259-7 231 nt1 973 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 259 nt7 231 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QKW_RS19910GCF_000450425#QKW_RS19910
RROmpRCurrent focus
5 259-5 945 nt · Forward (+)
QKW_RS19915GCF_000450425#QKW_RS19915
HKClassic
5 939-7 231 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450425#QKW_RS19910The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304790
Simplified PFAM architecture for RROC_1304790
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1304790
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000450425#QKW_RS19910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 345 · GCF_000450425
AssemblyASM45042v2 · Contighaploid
Genome composition4 250 589 bp · 28,5% GCClostridioides difficile DA00210
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key