1 Response_reg#1
4-114 aa · 111 aa · 63.8% of protein
Raw token
Response_reg:4:5.25e-22:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKU_RS17510
Response regulator, unclassified
Clostridioides difficile DA00203 · GCF_000450405
ClassRRTypeunclassifiedLength174 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450405#QKU_RS17510Stable P2CS identifier used across views.
GenomeGCF_000450405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length174 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 174 aa (63.8%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:5.25e-22:114:113:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450405::NZ_AVJS01000012.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span809685-810209Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKU_3518RefSeq proteinWP_021401959.1
Context group ID
GCF_000450405::NZ_AVJS01000012.1::G00055Context members
QKU_RS17510
Partner locus tags
QKU_RS17510
Partner old locus tags
QKU_3518
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021401959.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKU_RS17510Primary locus identifier stored in the genes table.
Old locus tagQKU_3518Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJS01000012.1Sequence record reported by the local genomic context database.
Genomic interval809 685-810 209 nt525 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span809 685-810 209 ntGCF_000450405::NZ_AVJS01000012.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450405::NZ_AVJS01000012.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span809 685-810 209 nt525 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
809 685 nt810 209 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QKU_RS17510GCF_000450405#QKU_RS17510
RRunclassifiedCurrent focus
809 685-810 209 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02245Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0789290
Simplified PFAM architecture for RROC_0789290
PFAM domain coverage: 203 / 245 aa (82.9%)
1 aa245 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-113] | LytTR[143-235]
- Domain count: 2
- Matched identifier: RROC_0789290
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; LytTR 143-235 ; LytTR 143-235
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 344 · GCF_000450405
AssemblyASM45040v2 · Contighaploid
Genome composition4 153 521 bp · 29,0% GCClostridioides difficile DA00203
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key