1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.68e-23:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKU_RS16880
Response regulator OmpR family
Clostridioides difficile DA00203 · GCF_000450405
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000450405#QKU_RS16880Stable P2CS identifier used across views.
GenomeGCF_000450405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 226 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-223 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:150:2.42e-22:223:75:77- Raw architecture: Response_reg:5:1.68e-23:114:111:111#Trans_reg_C:150:2.42e-22:223:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000450405::NZ_AVJS01000012.1::G00051
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span677829-681323Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKU_3399RefSeq proteinWP_021363031.1
Context group ID
GCF_000450405::NZ_AVJS01000012.1::G00051Context members
QKU_RS16880QKU_RS16885QKU_RS16890
Partner locus tags
QKU_RS16880QKU_RS16885QKU_RS16890
Partner old locus tags
QKU_3399QKU_3400QKU_3401
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363031.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKU_RS16880Primary locus identifier stored in the genes table.
Old locus tagQKU_3399Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJS01000012.1Sequence record reported by the local genomic context database.
Genomic interval677 829-678 509 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span677 829-681 323 ntGCF_000450405::NZ_AVJS01000012.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450405::NZ_AVJS01000012.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJS01000012.1All displayed genes belong to this local TCS context.
Neighborhood span677 829-681 323 nt3 495 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
677 829 nt681 323 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QKU_RS16880GCF_000450405#QKU_RS16880
RROmpRCurrent focus
677 829-678 509 nt · Reverse (-)
QKU_RS16885GCF_000450405#QKU_RS16885
HKClassic
678 559-680 574 nt · Reverse (-)
QKU_RS16890GCF_000450405#QKU_RS16890
RROmpR
680 646-681 323 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS17160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1410983
Simplified PFAM architecture for RROC_1410983
PFAM domain coverage: 183 / 226 aa (81.0%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1410983
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS17160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 344 · GCF_000450405
AssemblyASM45040v2 · Contighaploid
Genome composition4 153 521 bp · 29,0% GCClostridioides difficile DA00203
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key