1 HAMP#1
166-232 aa · 67 aa · 14.3% of protein
Raw token
HAMP:166:0.00000427:232:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKQ_RS09490
Histidine kinase, Classic
Clostridioides difficile DA00196 · GCF_000450365
ClassHKTypeClassicLength467 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450365#QKQ_RS09490Stable P2CS identifier used across views.
GenomeGCF_000450365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length467 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 467 aa (51.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa467 aa
Domain-by-domain annotation3 items
2 HisKA#2
245-312 aa · 68 aa · 14.6% of protein
Raw token
HisKA:245:0.0000000000000239:312:68:643 HATPase_c#3
359-465 aa · 107 aa · 22.9% of protein
Raw token
HATPase_c:359:1.27e-26:465:108:109- Raw architecture: HAMP:166:0.00000427:232:69:69#HisKA:245:0.0000000000000239:312:68:64#HATPase_c:359:1.27e-26:465:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450365::NZ_AVJQ01000014.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span144375-146507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKQ_1903RefSeq proteinWP_021401308.1
Context group ID
GCF_000450365::NZ_AVJQ01000014.1::G00026Context members
QKQ_RS09485QKQ_RS09490
Partner locus tags
QKQ_RS09485QKQ_RS09490
Partner old locus tags
QKQ_1902QKQ_1903
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021401308.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKQ_RS09490Primary locus identifier stored in the genes table.
Old locus tagQKQ_1903Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJQ01000014.1Sequence record reported by the local genomic context database.
Genomic interval145 104-146 507 nt1 404 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span144 375-146 507 ntGCF_000450365::NZ_AVJQ01000014.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450365::NZ_AVJQ01000014.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJQ01000014.1All displayed genes belong to this local TCS context.
Neighborhood span144 375-146 507 nt2 133 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
144 375 nt146 507 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QKQ_RS09485GCF_000450365#QKQ_RS09485
RROmpR
144 375-145 100 nt · Forward (+)
QKQ_RS09490GCF_000450365#QKQ_RS09490
HKClassicCurrent focus
145 104-146 507 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450365#QKQ_RS09490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1748395
Simplified PFAM architecture for HKOC_1748395
PFAM domain coverage: 172 / 467 aa (36.8%)
1 aa467 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-309] | HATPase_c[359-465]
- Domain count: 2
- Matched identifier: HKOC_1748395
- Positioned domains: HisKA 245-309 ; HATPase_c 359-465
Cluster members and taxonomy
Representative gene: GCF_000450365#QKQ_RS09490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 342 · GCF_000450365
AssemblyASM45036v2 · Contighaploid
Genome composition4 254 880 bp · 29,0% GCClostridioides difficile DA00196
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key