1 HisKA#1
52-117 aa · 66 aa · 23.9% of protein
Raw token
HisKA:52:0.00000000284:117:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QKG_RS20135
Histidine kinase, Classic
Clostridioides difficile DA00183 · GCF_000450285
ClassHKTypeClassicLength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450285#QKG_RS20135Stable P2CS identifier used across views.
GenomeGCF_000450285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 276 aa (62.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa276 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
167-273 aa · 107 aa · 38.8% of protein
Raw token
HATPase_c:167:5.1e-28:273:107:109- Raw architecture: HisKA:52:0.00000000284:117:66:64#HATPase_c:167:5.1e-28:273:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450285::NZ_AVJL01000021.1::G00005
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span13677-14507Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQKG_0448RefSeq proteinWP_021399960.1
Context group ID
GCF_000450285::NZ_AVJL01000021.1::G00005Context members
QKG_RS20135
Partner locus tags
QKG_RS20135
Partner old locus tags
QKG_0448
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021399960.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQKG_RS20135Primary locus identifier stored in the genes table.
Old locus tagQKG_0448Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJL01000021.1Sequence record reported by the local genomic context database.
Genomic interval13 677-14 507 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span13 677-14 507 ntGCF_000450285::NZ_AVJL01000021.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450285::NZ_AVJL01000021.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJL01000021.1All displayed genes belong to this local TCS context.
Neighborhood span13 677-14 507 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 677 nt14 507 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QKG_RS20135GCF_000450285#QKG_RS20135
HKClassicCurrent focus
13 677-14 507 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450285#QKG_RS20135The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2903888
Simplified PFAM architecture for HKOC_2903888
PFAM domain coverage: 172 / 276 aa (62.3%)
1 aa276 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[53-117] | HATPase_c[167-273]
- Domain count: 2
- Matched identifier: HKOC_2903888
- Positioned domains: HisKA 53-117 ; HATPase_c 167-273
Cluster members and taxonomy
Representative gene: GCF_000450285#QKG_RS20135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 337 · GCF_000450285
AssemblyASM45028v2 · Contighaploid
Genome composition4 071 468 bp · 28,5% GCClostridioides difficile DA00183
Signal transduction countsGenes 99 · HK 45 · RR 52CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key