1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.62e-24:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QK3_RS15415
Response regulator OmpR family
Clostridioides difficile DA00145 · GCF_000450145
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450145#QK3_RS15415Stable P2CS identifier used across views.
GenomeGCF_000450145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 224 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 33.0% of protein
Raw token
Trans_reg_C:149:1.27e-25:222:75:77- Raw architecture: Response_reg:4:1.62e-24:113:111:111#Trans_reg_C:149:1.27e-25:222:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450145::NZ_AVJE01000111.1::G00047
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46824-47498Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQK3_3125RefSeq proteinWP_009891366.1
Context group ID
GCF_000450145::NZ_AVJE01000111.1::G00047Context members
QK3_RS15415
Partner locus tags
QK3_RS15415
Partner old locus tags
QK3_3125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009891366.1Primary protein accession used for annex mappings.
UniProt accessionA0AB74R4R2Primary UniProt accession resolved in the annex database.
UniProt IDA0AB74R4R2_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQK3_RS15415Primary locus identifier stored in the genes table.
Old locus tagQK3_3125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJE01000111.1Sequence record reported by the local genomic context database.
Genomic interval46 824-47 498 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 824-47 498 ntGCF_000450145::NZ_AVJE01000111.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450145::NZ_AVJE01000111.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJE01000111.1All displayed genes belong to this local TCS context.
Neighborhood span46 824-47 498 nt675 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 824 nt47 498 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QK3_RS15415GCF_000450145#QK3_RS15415
RROmpRCurrent focus
46 824-47 498 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0215180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1528472
Simplified PFAM architecture for RROC_1528472
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-223]
- Domain count: 2
- Matched identifier: RROC_1528472
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-223 ; Trans_reg_C 150-223
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0215180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 330 · GCF_000450145
AssemblyASM45014v2 · Contighaploid
Genome composition4 051 066 bp · 28,5% GCClostridioides difficile DA00145
Signal transduction countsGenes 101 · HK 47 · RR 53CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key