1 Response_reg#1
31-108 aa · 78 aa · 40.2% of protein
Raw token
Response_reg:31:0.000000000000013:108:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIY_RS16105
Response regulator NarL family
Clostridioides difficile DA00141 · GCF_000450105
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450105#QIY_RS16105Stable P2CS identifier used across views.
GenomeGCF_000450105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 194 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
128-184 aa · 57 aa · 29.4% of protein
Raw token
HTH_LUXR:128:2.16e-17:184:57:58- Raw architecture: Response_reg:31:0.000000000000013:108:78:111#HTH_LUXR:128:2.16e-17:184:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450105::NZ_AVJC01000046.1::G00049
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span26228-26812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIY_3241RefSeq proteinWP_021392276.1
Context group ID
GCF_000450105::NZ_AVJC01000046.1::G00049Context members
QIY_RS16105
Partner locus tags
QIY_RS16105
Partner old locus tags
QIY_3241
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021392276.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIY_RS16105Primary locus identifier stored in the genes table.
Old locus tagQIY_3241Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJC01000046.1Sequence record reported by the local genomic context database.
Genomic interval26 228-26 812 nt585 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 228-26 812 ntGCF_000450105::NZ_AVJC01000046.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450105::NZ_AVJC01000046.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJC01000046.1All displayed genes belong to this local TCS context.
Neighborhood span26 228-26 812 nt585 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 228 nt26 812 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIY_RS16105GCF_000450105#QIY_RS16105
RRNarLCurrent focus
26 228-26 812 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449145#QCS_RS15630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081560
Simplified PFAM architecture for RROC_2081560
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081560
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000449145#QCS_RS15630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 328 · GCF_000450105
AssemblyASM45010v2 · Contighaploid
Genome composition4 089 728 bp · 29,0% GCClostridioides difficile DA00141
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key