1 HisKA#1
18-83 aa · 66 aa · 27.3% of protein
Raw token
HisKA:18:0.00000000259:83:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIW_RS20950
Histidine kinase, Classic
Clostridioides difficile DA00134 · GCF_000450085
ClassHKTypeClassicLength242 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450085#QIW_RS20950Stable P2CS identifier used across views.
GenomeGCF_000450085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length242 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 242 aa (71.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa242 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
133-239 aa · 107 aa · 44.2% of protein
Raw token
HATPase_c:133:6.1e-28:239:107:109- Raw architecture: HisKA:18:0.00000000259:83:66:64#HATPase_c:133:6.1e-28:239:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450085::NZ_AVJB01000036.1::G00011
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span10625-11353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIW_0546RefSeq proteinWP_021392152.1
Context group ID
GCF_000450085::NZ_AVJB01000036.1::G00011Context members
QIW_RS20950
Partner locus tags
QIW_RS20950
Partner old locus tags
QIW_0546
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021392152.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIW_RS20950Primary locus identifier stored in the genes table.
Old locus tagQIW_0546Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJB01000036.1Sequence record reported by the local genomic context database.
Genomic interval10 625-11 353 nt729 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 625-11 353 ntGCF_000450085::NZ_AVJB01000036.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450085::NZ_AVJB01000036.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJB01000036.1All displayed genes belong to this local TCS context.
Neighborhood span10 625-11 353 nt729 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 625 nt11 353 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIW_RS20950GCF_000450085#QIW_RS20950
HKClassicCurrent focus
10 625-11 353 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02960Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1674086
Simplified PFAM architecture for HKOC_1674086
PFAM domain coverage: 223 / 474 aa (47.0%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-238] | HisKA[251-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1674086
- Positioned domains: HAMP 188-238 ; HisKA 251-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 327 · GCF_000450085
AssemblyASM45008v2 · Contighaploid
Genome composition4 115 079 bp · 28,5% GCClostridioides difficile DA00134
Signal transduction countsGenes 106 · HK 52 · RR 54CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key