1 Response_reg#1
9-114 aa · 106 aa · 46.7% of protein
Raw token
Response_reg:9:1.03e-28:114:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIU_RS17140
Response regulator OmpR family
Clostridioides difficile DA00132 · GCF_000450065
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450065#QIU_RS17140Stable P2CS identifier used across views.
GenomeGCF_000450065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 227 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-226 aa · 70 aa · 30.8% of protein
Raw token
Trans_reg_C:157:2.25e-24:226:70:77- Raw architecture: Response_reg:9:1.03e-28:114:107:111#Trans_reg_C:157:2.25e-24:226:70:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450065::NZ_AVJA01000073.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span10318-11001Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIU_3433RefSeq proteinWP_021395486.1
Context group ID
GCF_000450065::NZ_AVJA01000073.1::G00055Context members
QIU_RS17140
Partner locus tags
QIU_RS17140
Partner old locus tags
QIU_3433
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395486.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIU_RS17140Primary locus identifier stored in the genes table.
Old locus tagQIU_3433Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJA01000073.1Sequence record reported by the local genomic context database.
Genomic interval10 318-11 001 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 318-11 001 ntGCF_000450065::NZ_AVJA01000073.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450065::NZ_AVJA01000073.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJA01000073.1All displayed genes belong to this local TCS context.
Neighborhood span10 318-11 001 nt684 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 318 nt11 001 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIU_RS17140GCF_000450065#QIU_RS17140
RROmpRCurrent focus
10 318-11 001 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450065#QIU_RS17140The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1356922
Simplified PFAM architecture for RROC_1356922
PFAM domain coverage: 179 / 227 aa (78.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[157-226]
- Domain count: 2
- Matched identifier: RROC_1356922
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 157-226 ; Trans_reg_C 157-226
Cluster members and taxonomy
Representative gene: GCF_000450065#QIU_RS17140
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 326 · GCF_000450065
AssemblyASM45006v2 · Contighaploid
Genome composition4 070 905 bp · 28,0% GCClostridioides difficile DA00132
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key