1 Response_reg#1
6-112 aa · 107 aa · 51.9% of protein
Raw token
Response_reg:6:1.33e-18:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIU_RS17050
Response regulator LytTR family
Clostridioides difficile DA00132 · GCF_000450065
ClassRRTypeLytTRLength206 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000450065#QIU_RS17050Stable P2CS identifier used across views.
GenomeGCF_000450065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length206 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 206 aa (81.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa206 aa
Domain-by-domain annotation2 items
2 LytTR#2
141-201 aa · 61 aa · 29.6% of protein
Raw token
LytTR:141:0.0000000000000074:201:61:98- Raw architecture: Response_reg:6:1.33e-18:112:110:111#LytTR:141:0.0000000000000074:201:61:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000450065::NZ_AVJA01000072.1::G00054
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span96022-96642Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIU_3415RefSeq proteinWP_021395484.1
Context group ID
GCF_000450065::NZ_AVJA01000072.1::G00054Context members
QIU_RS17050
Partner locus tags
QIU_RS17050
Partner old locus tags
QIU_3415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395484.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIU_RS17050Primary locus identifier stored in the genes table.
Old locus tagQIU_3415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJA01000072.1Sequence record reported by the local genomic context database.
Genomic interval96 022-96 642 nt621 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span96 022-96 642 ntGCF_000450065::NZ_AVJA01000072.1::G00054
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450065::NZ_AVJA01000072.1::G00054Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJA01000072.1All displayed genes belong to this local TCS context.
Neighborhood span96 022-96 642 nt621 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
96 022 nt96 642 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QIU_RS17050GCF_000450065#QIU_RS17050
RRLytTRCurrent focus
96 022-96 642 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0219120Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988502
Simplified PFAM architecture for RROC_0988502
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[141-226]
- Domain count: 2
- Matched identifier: RROC_0988502
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; LytTR 141-226 ; LytTR 141-226
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0219120
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 326 · GCF_000450065
AssemblyASM45006v2 · Contighaploid
Genome composition4 070 905 bp · 28,0% GCClostridioides difficile DA00132
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key