1 HisKA_2#1
190-264 aa · 75 aa · 19.6% of protein
Raw token
HisKA_2:190:4.39e-16:264:76:76P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QIU_RS09785
Histidine kinase, Classic
Clostridioides difficile DA00132 · GCF_000450065
ClassHKTypeClassicLength383 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000450065#QIU_RS09785Stable P2CS identifier used across views.
GenomeGCF_000450065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKA_2HATPase_c
Protein length383 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 383 aa (45.2%)Merged over positioned domains only.
Domain description1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa383 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
284-381 aa · 98 aa · 25.6% of protein
Raw token
HATPase_c:284:0.0000000703:381:114:109- Raw architecture: HisKA_2:190:4.39e-16:264:76:76#HATPase_c:284:0.0000000703:381:114:109
- Domain description: 1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000450065::NZ_AVJA01000050.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13661-15637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQIU_1922RefSeq proteinWP_021395406.1
Context group ID
GCF_000450065::NZ_AVJA01000050.1::G00032Context members
QIU_RS09780QIU_RS09785
Partner locus tags
QIU_RS09780QIU_RS09785
Partner old locus tags
QIU_1920QIU_1922
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021395406.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQIU_RS09785Primary locus identifier stored in the genes table.
Old locus tagQIU_1922Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVJA01000050.1Sequence record reported by the local genomic context database.
Genomic interval14 486-15 637 nt1 152 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 661-15 637 ntGCF_000450065::NZ_AVJA01000050.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000450065::NZ_AVJA01000050.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVJA01000050.1All displayed genes belong to this local TCS context.
Neighborhood span13 661-15 637 nt1 977 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 661 nt15 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QIU_RS09780GCF_000450065#QIU_RS09780
RRAmiR_NasR
13 661-14 236 nt · Forward (+)
QIU_RS09785GCF_000450065#QIU_RS09785
HKClassicCurrent focus
14 486-15 637 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000450065#QIU_RS09785The current gene is the representative for this cluster.
PFAM architectureHisKA_2 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2582386
Simplified PFAM architecture for HKOC_2582386
PFAM domain coverage: 166 / 383 aa (43.3%)
1 aa383 aa
HisKA_2HATPase_c
- Simplified architecture: HisKA_2 + HATPase_c
- Raw architecture: HisKA_2[190-261] | HATPase_c[287-380]
- Domain count: 2
- Matched identifier: HKOC_2582386
- Positioned domains: HisKA_2 190-261 ; HATPase_c 287-380
Cluster members and taxonomy
Representative gene: GCF_000450065#QIU_RS09785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 326 · GCF_000450065
AssemblyASM45006v2 · Contighaploid
Genome composition4 070 905 bp · 28,0% GCClostridioides difficile DA00132
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key