1 PAS_8#1
532-569 aa · 38 aa · 4.2% of protein
Raw token
PAS_8:532:0.00008:569:38:65P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QI7_RS12105
Histidine kinase, Classic
Clostridioides difficile 6042 · GCF_000449865
ClassHKTypeClassicLength912 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449865#QI7_RS12105Stable P2CS identifier used across views.
GenomeGCF_000449865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
PAS_8HisKAHATPase_c
Protein length912 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage222 / 912 aa (24.3%)Merged over positioned domains only.
Domain description1 PAS_8,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa912 aa
Domain-by-domain annotation3 items
2 HisKA#2
655-726 aa · 72 aa · 7.9% of protein
Raw token
HisKA:655:0.00000000197:726:72:643 HATPase_c#3
774-885 aa · 112 aa · 12.3% of protein
Raw token
HATPase_c:774:1.21e-25:885:112:109- Raw architecture: PAS_8:532:0.00008:569:38:65#HisKA:655:0.00000000197:726:72:64#HATPase_c:774:1.21e-25:885:112:109
- Domain description: 1 PAS_8,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449865::NZ_AVIQ01000212.1::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span5465-8203Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQI7_3438RefSeq proteinWP_003434104.1
Context group ID
GCF_000449865::NZ_AVIQ01000212.1::G00043Context members
QI7_RS12105
Partner locus tags
QI7_RS12105
Partner old locus tags
QI7_3438
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003434104.1Primary protein accession used for annex mappings.
UniProt accessionA0A9P3YRK5Primary UniProt accession resolved in the annex database.
UniProt IDA0A9P3YRK5_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQI7_RS12105Primary locus identifier stored in the genes table.
Old locus tagQI7_3438Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIQ01000212.1Sequence record reported by the local genomic context database.
Genomic interval5 465-8 203 nt2 739 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 465-8 203 ntGCF_000449865::NZ_AVIQ01000212.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449865::NZ_AVIQ01000212.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIQ01000212.1All displayed genes belong to this local TCS context.
Neighborhood span5 465-8 203 nt2 739 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 465 nt8 203 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QI7_RS12105GCF_000449865#QI7_RS12105
HKClassicCurrent focus
5 465-8 203 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS16670Use this link to inspect the representative gene detail.
PFAM architecturePAS_8 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0387840
Simplified PFAM architecture for HKOC_0387840
PFAM domain coverage: 221 / 912 aa (24.2%)
1 aa912 aa
PAS_8HisKAHATPase_c
- Simplified architecture: PAS_8 + HisKA + HATPase_c
- Raw architecture: PAS_8[532-572] | HisKA[656-724] | HATPase_c[774-884]
- Domain count: 3
- Matched identifier: HKOC_0387840
- Positioned domains: PAS_8 532-572 ; HisKA 656-724 ; HATPase_c 774-884
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS16670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 314 · GCF_000449865
AssemblyASM44986v2 · Contighaploid
Genome composition3 945 922 bp · 28,0% GCClostridioides difficile 6042
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key