1 HisKA#1
558-624 aa · 67 aa · 8.6% of protein
Raw token
HisKA:558:1.66e-18:624:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QI3_RS13205
Histidine kinase, Classic
Clostridioides difficile 842 · GCF_000449825
ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449825#QI3_RS13205Stable P2CS identifier used across views.
GenomeGCF_000449825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length778 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
671-775 aa · 105 aa · 13.5% of protein
Raw token
HATPase_c:671:0.000000000391:775:110:109- Raw architecture: HisKA:558:1.66e-18:624:67:64#HATPase_c:671:0.000000000391:775:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449825::NZ_AVIO01000123.1::G00043
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span18922-21258Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQI3_2604RefSeq proteinWP_022620489.1
Context group ID
GCF_000449825::NZ_AVIO01000123.1::G00043Context members
QI3_RS13205
Partner locus tags
QI3_RS13205
Partner old locus tags
QI3_2604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022620489.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X8WQC2Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X8WQC2_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQI3_RS13205Primary locus identifier stored in the genes table.
Old locus tagQI3_2604Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIO01000123.1Sequence record reported by the local genomic context database.
Genomic interval18 922-21 258 nt2 337 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span18 922-21 258 ntGCF_000449825::NZ_AVIO01000123.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449825::NZ_AVIO01000123.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIO01000123.1All displayed genes belong to this local TCS context.
Neighborhood span18 922-21 258 nt2 337 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 922 nt21 258 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QI3_RS13205GCF_000449825#QI3_RS13205
HKClassicCurrent focus
18 922-21 258 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS13565Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0599067
Simplified PFAM architecture for HKOC_0599067
PFAM domain coverage: 172 / 778 aa (22.1%)
1 aa778 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[558-624] | HATPase_c[671-775]
- Domain count: 2
- Matched identifier: HKOC_0599067
- Positioned domains: HisKA 558-624 ; HATPase_c 671-775
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS13565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 312 · GCF_000449825
AssemblyASM44982v2 · Contighaploid
Genome composition4 005 916 bp · 28,0% GCClostridioides difficile 842
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key