1 Response_reg#1
9-120 aa · 112 aa · 36.8% of protein
Raw token
Response_reg:9:3.47e-28:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QGW_RS02920
Response regulator, PleD family
Clostridioides difficile 824 · GCF_000449785
ClassRRTypePleDLength304 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449785#QGW_RS02920Stable P2CS identifier used across views.
GenomeGCF_000449785Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length304 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage259 / 304 aa (85.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa304 aa
Domain-by-domain annotation2 items
2 GGDEF#2
153-299 aa · 147 aa · 48.4% of protein
Raw token
GGDEF:153:4.99e-45:299:150:160- Raw architecture: Response_reg:9:3.47e-28:120:112:111#GGDEF:153:4.99e-45:299:150:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449785::NZ_AVIM01000019.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span42845-43708Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQGW_0580RefSeq proteinWP_418721820.1
Context group ID
GCF_000449785::NZ_AVIM01000019.1::G00012Context members
QGW_RS02920
Partner locus tags
QGW_RS02920
Partner old locus tags
QGW_0580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_418721820.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQGW_RS02920Primary locus identifier stored in the genes table.
Old locus tagQGW_0580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIM01000019.1Sequence record reported by the local genomic context database.
Genomic interval42 845-43 708 nt864 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span42 845-43 708 ntGCF_000449785::NZ_AVIM01000019.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449785::NZ_AVIM01000019.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIM01000019.1All displayed genes belong to this local TCS context.
Neighborhood span42 845-43 708 nt864 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 845 nt43 708 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QGW_RS02920GCF_000449785#QGW_RS02920
RRPleDCurrent focus
42 845-43 708 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449785#QGW_RS02920The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0565106
Simplified PFAM architecture for RROC_0565106
PFAM domain coverage: 259 / 304 aa (85.2%)
1 aa304 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-120] | GGDEF[153-299]
- Domain count: 2
- Matched identifier: RROC_0565106
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120 ; GGDEF 153-299 ; GGDEF 153-299
Cluster members and taxonomy
Representative gene: GCF_000449785#QGW_RS02920
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 309 · GCF_000449785
AssemblyASM44978v2 · Contighaploid
Genome composition4 185 643 bp · 28,5% GCClostridioides difficile 824
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key