1 HisKA#1
46-93 aa · 48 aa · 18.7% of protein
Raw token
HisKA:46:0.000000692:93:53:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QGQ_RS03590
Histidine kinase, Classic
Clostridioides difficile 342 · GCF_000449745
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449745#QGQ_RS03590Stable P2CS identifier used across views.
GenomeGCF_000449745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 257 aa (61.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
139-247 aa · 109 aa · 42.4% of protein
Raw token
HATPase_c:139:5.01e-23:247:109:109- Raw architecture: HisKA:46:0.000000692:93:53:64#HATPase_c:139:5.01e-23:247:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449745::NZ_AVIK01000107.1::G00047
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30591-32297Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQGQ_2954RefSeq proteinWP_021388531.1
Context group ID
GCF_000449745::NZ_AVIK01000107.1::G00047Context members
QGQ_RS03590QGQ_RS03585
Partner locus tags
QGQ_RS03590QGQ_RS03585
Partner old locus tags
QGQ_2954QGQ_2955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021388531.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQGQ_RS03590Primary locus identifier stored in the genes table.
Old locus tagQGQ_2954Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVIK01000107.1Sequence record reported by the local genomic context database.
Genomic interval30 591-31 364 nt774 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span30 591-32 297 ntGCF_000449745::NZ_AVIK01000107.1::G00047
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449745::NZ_AVIK01000107.1::G00047Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVIK01000107.1All displayed genes belong to this local TCS context.
Neighborhood span30 591-32 297 nt1 707 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 591 nt32 297 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QGQ_RS03590GCF_000449745#QGQ_RS03590
HKClassicCurrent focus
30 591-31 364 nt · Reverse (-)
QGQ_RS03585GCF_000449745#QGQ_RS03585
RROmpR
31 605-32 297 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0217105Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2916039
Simplified PFAM architecture for HKOC_2916039
PFAM domain coverage: 109 / 257 aa (42.4%)
1 aa257 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[140-248]
- Domain count: 1
- Matched identifier: HKOC_2916039
- Positioned domains: HATPase_c 140-248
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0217105
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 306 · GCF_000449745
AssemblyASM44974v1 · Contighaploid
Genome composition4 045 993 bp · 28,5% GCClostridioides difficile 342
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key