1 HisKA#1
163-222 aa · 60 aa · 15.7% of protein
Raw token
HisKA:163:0.00000000148:222:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QGM_RS07370
Histidine kinase, Classic
Clostridioides difficile CD211 · GCF_000449705
ClassHKTypeClassicLength381 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449705#QGM_RS07370Stable P2CS identifier used across views.
GenomeGCF_000449705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length381 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 381 aa (43.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
268-374 aa · 107 aa · 28.1% of protein
Raw token
HATPase_c:268:1.12e-21:374:107:109- Raw architecture: HisKA:163:0.00000000148:222:60:64#HATPase_c:268:1.12e-21:374:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449705::NZ_AVII01000061.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1696-3651Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQGM_1503RefSeq proteinWP_234780229.1
Context group ID
GCF_000449705::NZ_AVII01000061.1::G00020Context members
QGM_RS07365QGM_RS07370
Partner locus tags
QGM_RS07365QGM_RS07370
Partner old locus tags
QGM_1502QGM_1503
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234780229.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQGM_RS07370Primary locus identifier stored in the genes table.
Old locus tagQGM_1503Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVII01000061.1Sequence record reported by the local genomic context database.
Genomic interval2 506-3 651 nt1 146 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 696-3 651 ntGCF_000449705::NZ_AVII01000061.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449705::NZ_AVII01000061.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVII01000061.1All displayed genes belong to this local TCS context.
Neighborhood span1 696-3 651 nt1 956 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 696 nt3 651 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QGM_RS07365GCF_000449705#QGM_RS07365
RROmpR
1 696-2 421 nt · Forward (+)
QGM_RS07370GCF_000449705#QGM_RS07370
HKClassicCurrent focus
2 506-3 651 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449705#QGM_RS07370The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2599380
Simplified PFAM architecture for HKOC_2599380
PFAM domain coverage: 169 / 381 aa (44.4%)
1 aa381 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-222] | HATPase_c[269-374]
- Domain count: 2
- Matched identifier: HKOC_2599380
- Positioned domains: HisKA 160-222 ; HATPase_c 269-374
Cluster members and taxonomy
Representative gene: GCF_000449705#QGM_RS07370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 304 · GCF_000449705
AssemblyASM44970v2 · Contighaploid
Genome composition4 054 786 bp · 28,5% GCClostridioides difficile CD211
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key