1 Response_reg#1
9-120 aa · 112 aa · 37.1% of protein
Raw token
Response_reg:9:2.62e-28:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QGM_RS02435
Response regulator, PleD family
Clostridioides difficile CD211 · GCF_000449705
ClassRRTypePleDLength302 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449705#QGM_RS02435Stable P2CS identifier used across views.
GenomeGCF_000449705Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regGGDEF
Protein length302 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage261 / 302 aa (86.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEFSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa302 aa
Domain-by-domain annotation2 items
2 GGDEF#2
153-301 aa · 149 aa · 49.3% of protein
Raw token
GGDEF:153:4.54e-44:301:152:160- Raw architecture: Response_reg:9:2.62e-28:120:112:111#GGDEF:153:4.54e-44:301:152:160
- Domain description: 1 Response_reg,1 GGDEF
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449705::NZ_AVII01000024.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span28822-29730Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQGM_0491RefSeq proteinWP_021390035.1
Context group ID
GCF_000449705::NZ_AVII01000024.1::G00008Context members
QGM_RS02435
Partner locus tags
QGM_RS02435
Partner old locus tags
QGM_0491
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021390035.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQGM_RS02435Primary locus identifier stored in the genes table.
Old locus tagQGM_0491Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVII01000024.1Sequence record reported by the local genomic context database.
Genomic interval28 822-29 730 nt909 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span28 822-29 730 ntGCF_000449705::NZ_AVII01000024.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449705::NZ_AVII01000024.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVII01000024.1All displayed genes belong to this local TCS context.
Neighborhood span28 822-29 730 nt909 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
28 822 nt29 730 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QGM_RS02435GCF_000449705#QGM_RS02435
RRPleDCurrent focus
28 822-29 730 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449705#QGM_RS02435The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0568634
Simplified PFAM architecture for RROC_0568634
PFAM domain coverage: 261 / 302 aa (86.4%)
1 aa302 aa
Response_regGGDEF
- Simplified architecture: Response_reg + GGDEF
- Raw architecture: Response_reg[9-120] | GGDEF[153-301]
- Domain count: 2
- Matched identifier: RROC_0568634
- Positioned domains: Response_reg 9-120 ; Response_reg 9-120 ; GGDEF 153-301 ; GGDEF 153-301
Cluster members and taxonomy
Representative gene: GCF_000449705#QGM_RS02435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 304 · GCF_000449705
AssemblyASM44970v2 · Contighaploid
Genome composition4 054 786 bp · 28,5% GCClostridioides difficile CD211
Signal transduction countsGenes 101 · HK 48 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key