1 HisKA#1
80-144 aa · 65 aa · 21.5% of protein
Raw token
HisKA:80:0.00000000000779:144:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMM_RS19705
Histidine kinase, Classic
Clostridioides difficile DA00275 · GCF_000449625
ClassHKTypeClassicLength303 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449625#QMM_RS19705Stable P2CS identifier used across views.
GenomeGCF_000449625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length303 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 303 aa (57.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa303 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
192-301 aa · 110 aa · 36.3% of protein
Raw token
HATPase_c:192:8.29e-18:301:110:109- Raw architecture: HisKA:80:0.00000000000779:144:65:64#HATPase_c:192:8.29e-18:301:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449625::NZ_AVKG01000023.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span4007-4918Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMM_0691RefSeq proteinWP_021405460.1
Context group ID
GCF_000449625::NZ_AVKG01000023.1::G00014Context members
QMM_RS19705
Partner locus tags
QMM_RS19705
Partner old locus tags
QMM_0691
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021405460.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMM_RS19705Primary locus identifier stored in the genes table.
Old locus tagQMM_0691Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKG01000023.1Sequence record reported by the local genomic context database.
Genomic interval4 007-4 918 nt912 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 007-4 918 ntGCF_000449625::NZ_AVKG01000023.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449625::NZ_AVKG01000023.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKG01000023.1All displayed genes belong to this local TCS context.
Neighborhood span4 007-4 918 nt912 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 007 nt4 918 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QMM_RS19705GCF_000449625#QMM_RS19705
HKClassicCurrent focus
4 007-4 918 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235905#HMPREF9945_RS05015Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1737766
Simplified PFAM architecture for HKOC_1737766
PFAM domain coverage: 175 / 468 aa (37.4%)
1 aa468 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[245-310] | HATPase_c[358-466]
- Domain count: 2
- Matched identifier: HKOC_1737766
- Positioned domains: HisKA 245-310 ; HATPase_c 358-466
Cluster members and taxonomy
Representative gene: GCF_000235905#HMPREF9945_RS05015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 358 · GCF_000449625
AssemblyASM44962v2 · Contighaploid
Genome composition4 080 079 bp · 28,5% GCClostridioides difficile DA00275
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key