1 Response_reg#1
5-112 aa · 108 aa · 47.0% of protein
Raw token
Response_reg:5:1.32e-31:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QMM_RS04335
Response regulator OmpR family
Clostridioides difficile DA00275 · GCF_000449625
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449625#QMM_RS04335Stable P2CS identifier used across views.
GenomeGCF_000449625Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:3.34e-30:226:77:77- Raw architecture: Response_reg:5:1.32e-31:112:109:111#Trans_reg_C:150:3.34e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449625::NZ_AVKG01000027.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3942-5566Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQMM_0861RefSeq proteinWP_021369333.1
Context group ID
GCF_000449625::NZ_AVKG01000027.1::G00015Context members
QMM_RS04335QMM_RS04340
Partner locus tags
QMM_RS04335QMM_RS04340
Partner old locus tags
QMM_0861QMM_0862
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021369333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQMM_RS04335Primary locus identifier stored in the genes table.
Old locus tagQMM_0861Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVKG01000027.1Sequence record reported by the local genomic context database.
Genomic interval3 942-4 634 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 942-5 566 ntGCF_000449625::NZ_AVKG01000027.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449625::NZ_AVKG01000027.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVKG01000027.1All displayed genes belong to this local TCS context.
Neighborhood span3 942-5 566 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 942 nt5 566 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QMM_RS04335GCF_000449625#QMM_RS04335
RROmpRCurrent focus
3 942-4 634 nt · Forward (+)
QMM_RS04340GCF_000449625#QMM_RS04340
HKClassic
4 631-5 566 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449005#QCE_RS04005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202419
Simplified PFAM architecture for RROC_1202419
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1202419
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000449005#QCE_RS04005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 358 · GCF_000449625
AssemblyASM44962v2 · Contighaploid
Genome composition4 080 079 bp · 28,5% GCClostridioides difficile DA00275
Signal transduction countsGenes 100 · HK 47 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key