Gene detail

QEU_RS12765

Histidine kinase, Classic

Clostridioides difficile CD159 · GCF_000449405

Open genome Open selected cluster RefSeq

ClassHKTypeClassicLength778 aaTM0ValidatedNoCompleteYesContextpaired

Gene IDGCF_000449405#QEU_RS12765Stable P2CS identifier used across views.

GenomeGCF_000449405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides

Selected clusterHKOC_0599071Run 6 · 82 sequences · id 100% · cov 80%

External referencesWP_022618065.1 · MIST4 QEU_RS12765RefSeq · MIST4

Domain signature

Compact overview inferred from the domain field

HisKAHATPase_c

Protein length778 aaLength used to scale native and Biotite-like views.

Annotated domains22 with usable coordinates.

Domain coverage172 / 778 aa (22.1%)Merged over positioned domains only.

Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.

Signal peptideUnavailableNo TMPRED prediction file matched this gene.

Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.

Complete domain annotations

Domain view

Native Biotite-like

Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.

1 aa778 aa

Domain-by-domain annotation2 items

1 HisKA#1

558-624 aa · 67 aa · 8.6% of protein

Raw tokenHisKA:558:1.42e-18:624:67:64

2 HATPase_c#2

671-775 aa · 105 aa · 13.5% of protein

Raw tokenHATPase_c:671:0.000000000396:775:110:109

Raw architecture: HisKA:558:1.42e-18:624:67:64#HATPase_c:671:0.000000000396:775:110:109
Domain description: 1 HisKA,1 HATPase_c
TM description: N/A
TMPRED source: No TMPRED file loaded
TMPRED segments: N/A
Complete: Yes

Context mapping

Resolved via p2cs_tcs_context.db when a locus tag match exists

Context labelpairedGCF_000449405::NZ_AVHV01000199.1::G00042

Group size22 locus tags listed below.

HK / RR1 / 1Counts resolved for the local TCS neighborhood.

Context span9535-12559Genomic interval covered by the local TCS group.

Identifiers

Old locus tagQEU_2597RefSeq proteinWP_022618065.1

Context group IDGCF_000449405::NZ_AVHV01000199.1::G00042

Context members

QEU_RS12765QEU_RS12770

Partner locus tags

QEU_RS12765QEU_RS12770

Partner old locus tags

QEU_2597QEU_2598

Partner protein IDs

WP_022618065.1 WP_003431132.1

External references

Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table

No UniProt / GO / PubMed mapping was found for WP_022618065.1.

Genomic coordinates

Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table

Current locus tagQEU_RS12765Primary locus identifier stored in the genes table.

Old locus tagQEU_2597Legacy locus tag recovered from the local context mapping.

Contig / repliconNZ_AVHV01000199.1Sequence record reported by the local genomic context database.

Genomic interval9 535-11 871 nt2 337 nt · Reverse (-)

StrandReverse (-)Strand sign follows the local context database convention.

Local TCS group span9 535-12 559 ntGCF_000449405::NZ_AVHV01000199.1::G00042

Quick actions

Open genome Search genes in genome

Local neighborhood

Graphical neighborhood resolved from the local TCS context group on the current contig

GCF_000449405::NZ_AVHV01000199.1::G00042

Graphic view

Compact Biotite-like

Zoom

Full window Focus gene

Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.

Context labelpairedNeighborhood members are ordered by genomic coordinates.

Contig / repliconNZ_AVHV01000199.1All displayed genes belong to this local TCS context.

Neighborhood span9 535-12 559 nt3 025 nt

Members21 current focus gene

Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.

9 535 nt12 559 nt

+-QEU_RS12765 QEU_RS12770

Neighborhood gene cards

2 genes in the current local neighborhood.

QEU_RS12765GCF_000449405#QEU_RS12765

HKClassicCurrent focus

9 535-11 871 nt · Reverse (-)

Old locus QEU_2597RefSeq WP_022618065.1

Open current gene

QEU_RS12770GCF_000449405#QEU_RS12770

RROmpR

11 843-12 559 nt · Reverse (-)

Old locus QEU_2598RefSeq WP_003431132.1

Open gene

Clusters

CD-HIT memberships and selected cluster details for the current gene class

Available memberships1 cluster

HKOC_0599071HK

Run 682 sequencesid 100%cov 80%

PFAM HisKA + HATPase_c

Representative GCF_000448885#QAU_RS13155

Selected clusterHKOC_0599071Run 6 · HK · 82 sequences

Representative sequenceGCF_000448885#QAU_RS13155Use this link to inspect the representative gene detail.

PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.

Open in cluster search Open representative gene

PFAM architecture for HKOC_0599071

Simplified PFAM architecture for HKOC_0599071

PFAM domain coverage: 172 / 778 aa (22.1%)

1 aa778 aa

HisKAHATPase_c

Simplified architecture: HisKA + HATPase_c
Raw architecture: HisKA[558-624] | HATPase_c[671-775]
Domain count: 2
Matched identifier: HKOC_0599071
Positioned domains: HisKA 558-624 ; HATPase_c 671-775

Cluster members and taxonomy

Representative gene: GCF_000448885#QAU_RS13155

Displayed with 5 columns and 10 rows per page from the local display config.

Showing members 1 to 50 over 82 total members. Page 1 / 2.

GCF_000448885#QAU_RS13155 (representative) QAU_RS13155 · HK · Classic RefSeq: WP_022618065.1	GCF_000449005#QCE_RS13150 QCE_RS13150 · HK · Classic RefSeq: WP_022618065.1	GCF_000449325#QEM_RS11990 QEM_RS11990 · HK · Classic RefSeq: WP_022618065.1	GCF_000449405#QEU_RS12765 QEU_RS12765 · HK · Classic RefSeq: WP_022618065.1	GCF_000449445#QEY_RS12915 QEY_RS12915 · HK · Classic RefSeq: WP_022618065.1
GCF_000449565#QMI_RS13165 QMI_RS13165 · HK · Classic RefSeq: WP_022618065.1	GCF_000449625#QMM_RS13240 QMM_RS13240 · HK · Classic RefSeq: WP_022618065.1	GCF_000449905#QIC_RS13100 QIC_RS13100 · HK · Classic RefSeq: WP_022618065.1	GCF_000450185#QK7_RS13735 QK7_RS13735 · HK · Classic RefSeq: WP_022618065.1	GCF_000450205#QK9_RS12920 QK9_RS12920 · HK · Classic RefSeq: WP_022618065.1
GCF_000450325#QKM_RS12320 QKM_RS12320 · HK · Classic RefSeq: WP_022618065.1	GCF_000450405#QKU_RS13180 QKU_RS13180 · HK · Classic RefSeq: WP_022618065.1	GCF_000450685#QMU_RS12875 QMU_RS12875 · HK · Classic RefSeq: WP_022618065.1	GCF_000450745#QO3_RS13250 QO3_RS13250 · HK · Classic RefSeq: WP_022618065.1	GCF_000450945#QQM_RS13840 QQM_RS13840 · HK · Classic RefSeq: WP_022618065.1
GCF_000451185#QQ3_RS13480 QQ3_RS13480 · HK · Classic RefSeq: WP_022618065.1	GCF_000451425#QOY_RS12830 QOY_RS12830 · HK · Classic RefSeq: WP_022618065.1	GCF_000451525#QQC_RS13365 QQC_RS13365 · HK · Classic RefSeq: WP_022618065.1	GCF_000451705#QS7_RS05815 QS7_RS05815 · HK · Classic RefSeq: WP_022618065.1	GCF_000451725#QS9_RS12840 QS9_RS12840 · HK · Classic RefSeq: WP_022618065.1
GCF_000530595#BN185_RS12860 BN185_RS12860 · HK · Classic RefSeq: WP_022618065.1	GCF_000531225#BN184_RS13270 BN184_RS13270 · HK · Classic RefSeq: WP_022618065.1	GCF_000531385#BN169_RS13115 BN169_RS13115 · HK · Classic RefSeq: WP_022618065.1	GCF_000531715#BN191_RS12655 BN191_RS12655 · HK · Classic RefSeq: WP_022618065.1	GCF_002302085#BGU87_RS08260 BGU87_RS08260 · HK · Classic RefSeq: WP_022618065.1
GCF_002303575#BGU68_RS03135 BGU68_RS03135 · HK · Classic RefSeq: WP_022618065.1	GCF_002940905#AWN78_RS06210 AWN78_RS06210 · HK · Classic RefSeq: WP_022618065.1	GCF_003313565#CDIF27639_RS13645 CDIF27639_RS13645 · HK · Classic RefSeq: WP_022618065.1	GCF_003932635#EGL77_RS00995 EGL77_RS00995 · HK · Classic RefSeq: WP_022618065.1	GCF_006379355#DA433_RS07140 DA433_RS07140 · HK · Classic RefSeq: WP_022618065.1
GCF_006408335#DA411_RS14350 DA411_RS14350 · HK · Classic RefSeq: WP_022618065.1	GCF_018884965#E1H29_RS13675 E1H29_RS13675 · HK · Classic RefSeq: WP_022618065.1	GCF_019427245#K1N47_RS01100 K1N47_RS01100 · HK · Classic RefSeq: WP_022618065.1	GCF_022695655#LWC40_RS13265 LWC40_RS13265 · HK · Classic RefSeq: WP_022618065.1	GCF_024451525#NOL94_RS16235 NOL94_RS16235 · HK · Classic RefSeq: WP_022618065.1
GCF_025532455#H3T74_RS12220 H3T74_RS12220 · HK · Classic RefSeq: WP_022618065.1	GCF_025532755#H3U05_RS03535 H3U05_RS03535 · HK · Classic RefSeq: WP_022618065.1	GCF_025532885#H3U12_RS03635 H3U12_RS03635 · HK · Classic RefSeq: WP_022618065.1	GCF_025532975#H3U14_RS03825 H3U14_RS03825 · HK · Classic RefSeq: WP_022618065.1	GCF_025533015#H3U21_RS03420 H3U21_RS03420 · HK · Classic RefSeq: WP_022618065.1
GCF_025533055#H3U22_RS03820 H3U22_RS03820 · HK · Classic RefSeq: WP_022618065.1	GCF_025533155#H3U27_RS03535 H3U27_RS03535 · HK · Classic RefSeq: WP_022618065.1	GCF_025533225#H3U38_RS01370 H3U38_RS01370 · HK · Classic RefSeq: WP_022618065.1	GCF_025533295#H3U36_RS01370 H3U36_RS01370 · HK · Classic RefSeq: WP_022618065.1	GCF_025533615#H3U55_RS00975 H3U55_RS00975 · HK · Classic RefSeq: WP_022618065.1
GCF_025533755#H3U62_RS01370 H3U62_RS01370 · HK · Classic RefSeq: WP_022618065.1	GCF_028596515#PSL78_RS02955 PSL78_RS02955 · HK · Classic RefSeq: WP_022618065.1	GCF_030251465#QQO77_RS07690 QQO77_RS07690 · HK · Classic RefSeq: WP_022618065.1	GCF_030251535#QQO85_RS06305 QQO85_RS06305 · HK · Classic RefSeq: WP_022618065.1	GCF_032081325#XC30_RS12100 XC30_RS12100 · HK · Classic RefSeq: WP_022618065.1

Genome taxonomy

Unknown

Taxonomy recordUnknownTaxon ID 1 151 291 · GCF_000449405

AssemblyASM44940v2 · Contighaploid

Genome composition3 986 487 bp · 28,5% GCClostridioides difficile CD159

Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0

Ranked taxonomy7 ranked levels available

SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides

Lineage path7 lineage nodes

1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides

Open genome Search genes in genome Search HK genes NCBI assembly files

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