1 Response_reg#1
5-112 aa · 108 aa · 47.0% of protein
Raw token
Response_reg:5:1.32e-31:112:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEU_RS12700
Response regulator OmpR family
Clostridioides difficile CD159 · GCF_000449405
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449405#QEU_RS12700Stable P2CS identifier used across views.
GenomeGCF_000449405Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 230 aa (80.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:3.34e-30:226:77:77- Raw architecture: Response_reg:5:1.32e-31:112:109:111#Trans_reg_C:150:3.34e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449405::NZ_AVHV01000198.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span759-2383Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEU_2584RefSeq proteinWP_021369333.1
Context group ID
GCF_000449405::NZ_AVHV01000198.1::G00041Context members
QEU_RS12695QEU_RS12700
Partner locus tags
QEU_RS12695QEU_RS12700
Partner old locus tags
QEU_2583QEU_2584
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021369333.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEU_RS12700Primary locus identifier stored in the genes table.
Old locus tagQEU_2584Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHV01000198.1Sequence record reported by the local genomic context database.
Genomic interval1 691-2 383 nt693 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span759-2 383 ntGCF_000449405::NZ_AVHV01000198.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449405::NZ_AVHV01000198.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHV01000198.1All displayed genes belong to this local TCS context.
Neighborhood span759-2 383 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
759 nt2 383 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QEU_RS12695GCF_000449405#QEU_RS12695
HKClassic
759-1 694 nt · Reverse (-)
QEU_RS12700GCF_000449405#QEU_RS12700
RROmpRCurrent focus
1 691-2 383 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449005#QCE_RS04005Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202419
Simplified PFAM architecture for RROC_1202419
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1202419
- Positioned domains: Response_reg 5-112 ; Response_reg 5-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000449005#QCE_RS04005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 291 · GCF_000449405
AssemblyASM44940v2 · Contighaploid
Genome composition3 986 487 bp · 28,5% GCClostridioides difficile CD159
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key