1 Response_reg#1
12-124 aa · 113 aa · 46.5% of protein
Raw token
Response_reg:12:0.0000000000000485:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEQ_RS08985
Response regulator LytTR family
Clostridioides difficile CD144 · GCF_000449365
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449365#QEQ_RS08985Stable P2CS identifier used across views.
GenomeGCF_000449365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 243 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
144-224 aa · 81 aa · 33.3% of protein
Raw token
LytTR:144:4.9e-18:224:87:98- Raw architecture: Response_reg:12:0.0000000000000485:124:117:111#LytTR:144:4.9e-18:224:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449365::NZ_AVHT01000035.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24757-25473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEQ_1817RefSeq proteinWP_224213955.1
Context group ID
GCF_000449365::NZ_AVHT01000035.1::G00028Context members
QEQ_RS08985
Partner locus tags
QEQ_RS08985
Partner old locus tags
QEQ_1817
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_224213955.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEQ_RS08985Primary locus identifier stored in the genes table.
Old locus tagQEQ_1817Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHT01000035.1Sequence record reported by the local genomic context database.
Genomic interval24 757-25 473 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 757-25 473 ntGCF_000449365::NZ_AVHT01000035.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449365::NZ_AVHT01000035.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHT01000035.1All displayed genes belong to this local TCS context.
Neighborhood span24 757-25 473 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 757 nt25 473 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QEQ_RS08985GCF_000449365#QEQ_RS08985
RRLytTRCurrent focus
24 757-25 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002302125#BGU89_RS17295Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0758747
Simplified PFAM architecture for RROC_0758747
PFAM domain coverage: 197 / 247 aa (79.8%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[16-127] | LytTR[150-234]
- Domain count: 2
- Matched identifier: RROC_0758747
- Positioned domains: Response_reg 16-127 ; Response_reg 16-127 ; LytTR 150-234 ; LytTR 150-234
Cluster members and taxonomy
Representative gene: GCF_002302125#BGU89_RS17295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 289 · GCF_000449365
AssemblyASM44936v2 · Contighaploid
Genome composition4 095 302 bp · 28,5% GCClostridioides difficile CD144
Signal transduction countsGenes 94 · HK 45 · RR 49CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key