1 HisKA#1
137-203 aa · 67 aa · 18.7% of protein
Raw token
HisKA:137:0.0000000000000164:203:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEM_RS10795
Histidine kinase, Classic
Clostridioides difficile CD132 · GCF_000449325
ClassHKTypeClassicLength358 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449325#QEM_RS10795Stable P2CS identifier used across views.
GenomeGCF_000449325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length358 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 358 aa (42.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa358 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
256-341 aa · 86 aa · 24.0% of protein
Raw token
HATPase_c:256:0.0000000561:341:90:109- Raw architecture: HisKA:137:0.0000000000000164:203:67:64#HATPase_c:256:0.0000000561:341:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449325::NZ_AVHR01000121.1::G00034
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span98603-100192Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEM_2187RefSeq proteinWP_021361920.1
Context group ID
GCF_000449325::NZ_AVHR01000121.1::G00034Context members
QEM_RS10795
Partner locus tags
QEM_RS10795
Partner old locus tags
QEM_2187
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021361920.1Primary protein accession used for annex mappings.
UniProt accessionA0A381ICQ1Primary UniProt accession resolved in the annex database.
UniProt IDA0A381ICQ1_CLODIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEM_RS10795Primary locus identifier stored in the genes table.
Old locus tagQEM_2187Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHR01000121.1Sequence record reported by the local genomic context database.
Genomic interval98 603-100 192 nt1 590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span98 603-100 192 ntGCF_000449325::NZ_AVHR01000121.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449325::NZ_AVHR01000121.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHR01000121.1All displayed genes belong to this local TCS context.
Neighborhood span98 603-100 192 nt1 590 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
98 603 nt100 192 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QEM_RS10795GCF_000449325#QEM_RS10795
HKClassicCurrent focus
98 603-100 192 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS12495Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359670
Simplified PFAM architecture for HKOC_1359670
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359670
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS12495
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 287 · GCF_000449325
AssemblyASM44932v2 · Contighaploid
Genome composition3 956 938 bp · 28,5% GCClostridioides difficile CD132
Signal transduction countsGenes 96 · HK 45 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key