1 Response_reg#1
9-118 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:9:6.84e-31:118:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QEM_RS02975
Response regulator OmpR family
Clostridioides difficile CD132 · GCF_000449325
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449325#QEM_RS02975Stable P2CS identifier used across views.
GenomeGCF_000449325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-232 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:156:2.95e-29:232:77:77- Raw architecture: Response_reg:9:6.84e-31:118:111:111#Trans_reg_C:156:2.95e-29:232:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449325::NZ_AVHR01000043.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6814-8972Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQEM_0603RefSeq proteinWP_009888460.1
Context group ID
GCF_000449325::NZ_AVHR01000043.1::G00011Context members
QEM_RS02975QEM_RS02980
Partner locus tags
QEM_RS02975QEM_RS02980
Partner old locus tags
QEM_0603QEM_0604
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009888460.1Primary protein accession used for annex mappings.
UniProt accessionA0A9Q8EBL8Primary UniProt accession resolved in the annex database.
UniProt IDA0A9Q8EBL8_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQEM_RS02975Primary locus identifier stored in the genes table.
Old locus tagQEM_0603Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHR01000043.1Sequence record reported by the local genomic context database.
Genomic interval6 814-7 521 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 814-8 972 ntGCF_000449325::NZ_AVHR01000043.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449325::NZ_AVHR01000043.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHR01000043.1All displayed genes belong to this local TCS context.
Neighborhood span6 814-8 972 nt2 159 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 814 nt8 972 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QEM_RS02975GCF_000449325#QEM_RS02975
RROmpRCurrent focus
6 814-7 521 nt · Forward (+)
QEM_RS02980GCF_000449325#QEM_RS02980
HKClassic
7 566-8 972 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0203460Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016364
Simplified PFAM architecture for RROC_1016364
PFAM domain coverage: 186 / 235 aa (79.1%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-117] | Trans_reg_C[156-232]
- Domain count: 2
- Matched identifier: RROC_1016364
- Positioned domains: Response_reg 9-117 ; Response_reg 9-117 ; Trans_reg_C 156-232 ; Trans_reg_C 156-232
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0203460
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 287 · GCF_000449325
AssemblyASM44932v2 · Contighaploid
Genome composition3 956 938 bp · 28,5% GCClostridioides difficile CD132
Signal transduction countsGenes 96 · HK 45 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key