1 HisKA#1
58-125 aa · 68 aa · 24.1% of protein
Raw token
HisKA:58:0.00000000000935:125:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCY_RS20610
Histidine kinase, Classic
Clostridioides difficile CD70 · GCF_000449225
ClassHKTypeClassicLength282 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449225#QCY_RS20610Stable P2CS identifier used across views.
GenomeGCF_000449225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length282 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 282 aa (64.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa282 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-281 aa · 113 aa · 40.1% of protein
Raw token
HATPase_c:169:2.62e-31:281:113:109- Raw architecture: HisKA:58:0.00000000000935:125:68:64#HATPase_c:169:2.62e-31:281:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449225::NZ_AVHF01000088.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13490-15070Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCY_1887RefSeq proteinWP_021376879.1
Context group ID
GCF_000449225::NZ_AVHF01000088.1::G00033Context members
QCY_RS20610QCY_RS09530
Partner locus tags
QCY_RS20610QCY_RS09530
Partner old locus tags
QCY_1887QCY_1888
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021376879.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCY_RS20610Primary locus identifier stored in the genes table.
Old locus tagQCY_1887Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHF01000088.1Sequence record reported by the local genomic context database.
Genomic interval13 490-14 338 nt849 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 490-15 070 ntGCF_000449225::NZ_AVHF01000088.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449225::NZ_AVHF01000088.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHF01000088.1All displayed genes belong to this local TCS context.
Neighborhood span13 490-15 070 nt1 581 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 490 nt15 070 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCY_RS20610GCF_000449225#QCY_RS20610
HKClassicCurrent focus
13 490-14 338 nt · Forward (+)
QCY_RS09530GCF_000449225#QCY_RS09530
RROmpR
14 372-15 070 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0209445Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0405625
Simplified PFAM architecture for HKOC_0405625
PFAM domain coverage: 494 / 900 aa (54.9%)
1 aa900 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[22-230] | DUF4118[409-514] | HisKA[676-743] | HATPase_c[788-898]
- Domain count: 4
- Matched identifier: HKOC_0405625
- Positioned domains: KdpD 22-230 ; DUF4118 409-514 ; HisKA 676-743 ; HATPase_c 788-898
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0209445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 275 · GCF_000449225
AssemblyASM44922v2 · Contighaploid
Genome composition4 055 978 bp · 28,5% GCClostridioides difficile CD70
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key