1 Response_reg#1
2-107 aa · 106 aa · 47.1% of protein
Raw token
Response_reg:2:1.2e-30:107:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCS_RS02190
Response regulator OmpR family
Clostridioides difficile CD51 · GCF_000449145
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449145#QCS_RS02190Stable P2CS identifier used across views.
GenomeGCF_000449145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 225 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-222 aa · 77 aa · 34.2% of protein
Raw token
Trans_reg_C:146:3.14e-28:222:77:77- Raw architecture: Response_reg:2:1.2e-30:107:108:111#Trans_reg_C:146:3.14e-28:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449145::NZ_AVHC01000029.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2-2122Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCS_0441RefSeq proteinWP_234779513.1
Context group ID
GCF_000449145::NZ_AVHC01000029.1::G00004Context members
QCS_RS02190QCS_RS02195
Partner locus tags
QCS_RS02190QCS_RS02195
Partner old locus tags
QCS_0441QCS_0442
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234779513.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCS_RS02190Primary locus identifier stored in the genes table.
Old locus tagQCS_0441Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHC01000029.1Sequence record reported by the local genomic context database.
Genomic interval2-679 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2-2 122 ntGCF_000449145::NZ_AVHC01000029.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449145::NZ_AVHC01000029.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHC01000029.1All displayed genes belong to this local TCS context.
Neighborhood span2-2 122 nt2 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 nt2 122 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCS_RS02190GCF_000449145#QCS_RS02190
RROmpRCurrent focus
2-679 nt · Forward (+)
QCS_RS02195GCF_000449145#QCS_RS02195
HKClassic
698-2 122 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449145#QCS_RS02190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466534
Simplified PFAM architecture for RROC_1466534
PFAM domain coverage: 182 / 225 aa (80.9%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-107] | Trans_reg_C[146-221]
- Domain count: 2
- Matched identifier: RROC_1466534
- Positioned domains: Response_reg 2-107 ; Response_reg 2-107 ; Trans_reg_C 146-221 ; Trans_reg_C 146-221
Cluster members and taxonomy
Representative gene: GCF_000449145#QCS_RS02190
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_000449145#QCS_RS02190 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 272 · GCF_000449145
AssemblyASM44914v2 · Contighaploid
Genome composition4 011 592 bp · 28,0% GCClostridioides difficile CD51
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key