1 HisKA#1
55-119 aa · 65 aa · 23.4% of protein
Raw token
HisKA:55:0.00000000000745:119:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCQ_RS21185
Histidine kinase, Classic
Clostridioides difficile CD49 · GCF_000449125
ClassHKTypeClassicLength278 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449125#QCQ_RS21185Stable P2CS identifier used across views.
GenomeGCF_000449125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length278 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 278 aa (62.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa278 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
167-276 aa · 110 aa · 39.6% of protein
Raw token
HATPase_c:167:4.96e-18:276:111:109- Raw architecture: HisKA:55:0.00000000000745:119:65:64#HATPase_c:167:4.96e-18:276:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449125::NZ_AVHB01000027.1::G00014
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span61813-62649Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCQ_0774RefSeq proteinWP_234779968.1
Context group ID
GCF_000449125::NZ_AVHB01000027.1::G00014Context members
QCQ_RS21185
Partner locus tags
QCQ_RS21185
Partner old locus tags
QCQ_0774
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_234779968.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCQ_RS21185Primary locus identifier stored in the genes table.
Old locus tagQCQ_0774Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHB01000027.1Sequence record reported by the local genomic context database.
Genomic interval61 813-62 649 nt837 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span61 813-62 649 ntGCF_000449125::NZ_AVHB01000027.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449125::NZ_AVHB01000027.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHB01000027.1All displayed genes belong to this local TCS context.
Neighborhood span61 813-62 649 nt837 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 813 nt62 649 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCQ_RS21185GCF_000449125#QCQ_RS21185
HKClassicCurrent focus
61 813-62 649 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449125#QCQ_RS21185The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2902943
Simplified PFAM architecture for HKOC_2902943
PFAM domain coverage: 175 / 278 aa (62.9%)
1 aa278 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[55-120] | HATPase_c[168-276]
- Domain count: 2
- Matched identifier: HKOC_2902943
- Positioned domains: HisKA 55-120 ; HATPase_c 168-276
Cluster members and taxonomy
Representative gene: GCF_000449125#QCQ_RS21185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 271 · GCF_000449125
AssemblyASM44912v2 · Contighaploid
Genome composition4 234 199 bp · 28,5% GCClostridioides difficile CD49
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key