1 Response_reg#1
4-105 aa · 102 aa · 43.6% of protein
Raw token
Response_reg:4:9.89e-19:105:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCQ_RS19590
Response regulator LytTR family
Clostridioides difficile CD49 · GCF_000449125
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449125#QCQ_RS19590Stable P2CS identifier used across views.
GenomeGCF_000449125Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 234 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
134-226 aa · 93 aa · 39.7% of protein
Raw token
LytTR:134:5.37e-19:226:98:98- Raw architecture: Response_reg:4:9.89e-19:105:107:111#LytTR:134:5.37e-19:226:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449125::NZ_AVHB01000107.1::G00058
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span41675-42379Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCQ_3985RefSeq proteinWP_021373135.1
Context group ID
GCF_000449125::NZ_AVHB01000107.1::G00058Context members
QCQ_RS19590
Partner locus tags
QCQ_RS19590
Partner old locus tags
QCQ_3985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021373135.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCQ_RS19590Primary locus identifier stored in the genes table.
Old locus tagQCQ_3985Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHB01000107.1Sequence record reported by the local genomic context database.
Genomic interval41 675-42 379 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span41 675-42 379 ntGCF_000449125::NZ_AVHB01000107.1::G00058
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449125::NZ_AVHB01000107.1::G00058Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHB01000107.1All displayed genes belong to this local TCS context.
Neighborhood span41 675-42 379 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 675 nt42 379 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCQ_RS19590GCF_000449125#QCQ_RS19590
RRLytTRCurrent focus
41 675-42 379 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000449125#QCQ_RS19590The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049063
Simplified PFAM architecture for RROC_1049063
PFAM domain coverage: 199 / 234 aa (85.0%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-110] | LytTR[135-226]
- Domain count: 2
- Matched identifier: RROC_1049063
- Positioned domains: Response_reg 4-110 ; Response_reg 4-110 ; LytTR 135-226 ; LytTR 135-226
Cluster members and taxonomy
Representative gene: GCF_000449125#QCQ_RS19590
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 271 · GCF_000449125
AssemblyASM44912v2 · Contighaploid
Genome composition4 234 199 bp · 28,5% GCClostridioides difficile CD49
Signal transduction countsGenes 98 · HK 46 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key