1 HisKA#1
4-69 aa · 66 aa · 28.9% of protein
Raw token
HisKA:4:0.00000000251:69:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCO_RS21120
Histidine kinase, Classic
Clostridioides difficile CD47 · GCF_000449105
ClassHKTypeClassicLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449105#QCO_RS21120Stable P2CS identifier used across views.
GenomeGCF_000449105Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 228 aa (75.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
119-225 aa · 107 aa · 46.9% of protein
Raw token
HATPase_c:119:9.72e-28:225:107:109- Raw architecture: HisKA:4:0.00000000251:69:66:64#HATPase_c:119:9.72e-28:225:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449105::NZ_AVHA01000079.1::G00031
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span163727-164413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCO_1848RefSeq proteinWP_330374633.1
Context group ID
GCF_000449105::NZ_AVHA01000079.1::G00031Context members
QCO_RS21120
Partner locus tags
QCO_RS21120
Partner old locus tags
QCO_1848
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330374633.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCO_RS21120Primary locus identifier stored in the genes table.
Old locus tagQCO_1848Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVHA01000079.1Sequence record reported by the local genomic context database.
Genomic interval163 727-164 413 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span163 727-164 413 ntGCF_000449105::NZ_AVHA01000079.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449105::NZ_AVHA01000079.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVHA01000079.1All displayed genes belong to this local TCS context.
Neighborhood span163 727-164 413 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
163 727 nt164 413 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCO_RS21120GCF_000449105#QCO_RS21120
HKClassicCurrent focus
163 727-164 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS02960Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1674086
Simplified PFAM architecture for HKOC_1674086
PFAM domain coverage: 223 / 474 aa (47.0%)
1 aa474 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-238] | HisKA[251-315] | HATPase_c[365-471]
- Domain count: 3
- Matched identifier: HKOC_1674086
- Positioned domains: HAMP 188-238 ; HisKA 251-315 ; HATPase_c 365-471
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS02960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 270 · GCF_000449105
AssemblyASM44910v2 · Contighaploid
Genome composition4 185 732 bp · 28,5% GCClostridioides difficile CD47
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key