1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.42e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCM_RS12585
Response regulator OmpR family
Clostridioides difficile CD46 · GCF_000449085
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449085#QCM_RS12585Stable P2CS identifier used across views.
GenomeGCF_000449085Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:5.52e-32:227:77:77- Raw architecture: Response_reg:4:3.42e-28:113:111:111#Trans_reg_C:151:5.52e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449085::NZ_AVGZ01000029.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22342-24353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCM_2559RefSeq proteinWP_009890737.1
Context group ID
GCF_000449085::NZ_AVGZ01000029.1::G00040Context members
QCM_RS12580QCM_RS12585
Partner locus tags
QCM_RS12580QCM_RS12585
Partner old locus tags
QCM_2558QCM_2559
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009890737.1Primary protein accession used for annex mappings.
UniProt accessionA0A069B0L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069B0L7_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCM_RS12585Primary locus identifier stored in the genes table.
Old locus tagQCM_2559Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGZ01000029.1Sequence record reported by the local genomic context database.
Genomic interval23 646-24 353 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span22 342-24 353 ntGCF_000449085::NZ_AVGZ01000029.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449085::NZ_AVGZ01000029.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGZ01000029.1All displayed genes belong to this local TCS context.
Neighborhood span22 342-24 353 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 342 nt24 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCM_RS12580GCF_000449085#QCM_RS12580
HKClassic
22 342-23 652 nt · Reverse (-)
QCM_RS12585GCF_000449085#QCM_RS12585
RROmpRCurrent focus
23 646-24 353 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016365
Simplified PFAM architecture for RROC_1016365
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016365
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212790
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 2 196 total members. Page 1 / 44.
GCF_000003215#QAC_RS0212790 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 269 · GCF_000449085
AssemblyASM44908v2 · Contighaploid
Genome composition4 018 890 bp · 28,5% GCClostridioides difficile CD46
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key