1 Response_reg#1
3-112 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:3:1.04e-31:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCK_RS04890
Response regulator OmpR family
Clostridioides difficile CD45 · GCF_000449065
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449065#QCK_RS04890Stable P2CS identifier used across views.
GenomeGCF_000449065Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:150:8.09e-29:226:77:77- Raw architecture: Response_reg:3:1.04e-31:112:111:111#Trans_reg_C:150:8.09e-29:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449065::NZ_AVGY01000052.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span35411-37017Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCK_0672RefSeq proteinWP_016729263.1
Context group ID
GCF_000449065::NZ_AVGY01000052.1::G00012Context members
QCK_RS04890QCK_RS04895
Partner locus tags
QCK_RS04890QCK_RS04895
Partner old locus tags
QCK_0672QCK_0673
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_016729263.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCK_RS04890Primary locus identifier stored in the genes table.
Old locus tagQCK_0672Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGY01000052.1Sequence record reported by the local genomic context database.
Genomic interval35 411-36 100 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span35 411-37 017 ntGCF_000449065::NZ_AVGY01000052.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449065::NZ_AVGY01000052.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGY01000052.1All displayed genes belong to this local TCS context.
Neighborhood span35 411-37 017 nt1 607 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 411 nt37 017 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCK_RS04890GCF_000449065#QCK_RS04890
RROmpRCurrent focus
35 411-36 100 nt · Forward (+)
QCK_RS04895GCF_000449065#QCK_RS04895
HKClassic
36 100-37 017 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000242355#MUI_RS0113320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1247740
Simplified PFAM architecture for RROC_1247740
PFAM domain coverage: 184 / 229 aa (80.3%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-112] | Trans_reg_C[153-226]
- Domain count: 2
- Matched identifier: RROC_1247740
- Positioned domains: Response_reg 3-112 ; Response_reg 3-112 ; Trans_reg_C 153-226 ; Trans_reg_C 153-226
Cluster members and taxonomy
Representative gene: GCF_000242355#MUI_RS0113320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 268 · GCF_000449065
AssemblyASM44906v2 · Contighaploid
Genome composition4 367 906 bp · 28,5% GCClostridioides difficile CD45
Signal transduction countsGenes 98 · HK 46 · RR 51CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key